Merge pull request #7 from johnne/devel

Devel
biodiversitydata-se · Dec 8, 2021 · 19d7fa8 · 19d7fa8
2 parents 956a865 + d197a50
commit 19d7fa8
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diff --git a/setup.py b/setup.py
@@ -5,7 +5,7 @@
 
 setup(
     name="coidb",
-    version="0.3.0",
+    version="0.3.1",
     author="John Sundh",
     url="https://github.com/NBISweden/coidb/",
     description="Workflow for downloading and formatting COI database",

diff --git a/src/coidb/scripts/common.py b/src/coidb/scripts/common.py
@@ -91,7 +91,7 @@ def filter_non_standard(df):
         seq = seq.replace("-", "").strip("N")
         letters = set([x for x in seq])
         for l in letters:
-            if l not in ["A", "C", "G", "T"]:
+            if l.upper() not in ["A", "C", "G", "T"]:
                 drop_ids.append(record_id)
                 break
     return df.drop(drop_ids), len(drop_ids)