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Update _methods.py
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Instead of having to reprocess things through SILVA, perhaps add ids for gg2? This is what I have from one project.
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callaband committed Nov 22, 2023
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5 changes: 5 additions & 0 deletions q2_katharoseq/_methods.py
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Expand Up @@ -43,6 +43,11 @@
'f__Bacillaceae;g__Bacillus',
'd__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;'
'o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus'],
'gg2': [
'd__Bacteria;p__Firmicutes_D;c__Bacilli;o__Bacillales_B_306089;f__Bacillaceae_H_294103;g__Bacillus_P_294101',
'd__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales_616009;f__Xanthomonadaceae_616009;g__Lysobacter_A_615995',
'd__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus'
],
'single': [
'd__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;'
'o__Burkholderiales;f__Comamonadaceae;g__Variovorax']
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