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Releases: bioasp/caspo

4.0.1

26 Aug 22:47
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  • add compatibility with clingo 5.5

4.0.0

21 May 21:25
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  • Migrate to Python 3
  • Migrate to Clingo 5

3.0.1

05 Oct 14:57
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  • Bugfix in strategies visualization
  • Bugfix in graph compression
  • Remove duplicates edges when reading a SIF file
  • Adds --optimum argument in caspo learn
  • Prints number of hyperedges in caspo learn
  • Adds stats

3.0.0

06 Aug 19:42
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  • Refactoring removing ZCA-based implementation
  • Use clingo python module (tested with clingo 4.5.x)
  • Re-design subcommands as learn, classify, design, predict, control, visualize, and test
  • Generate default visualizations using matplotlib and seaborn
  • Adds sphinx docs
  • Use travis-ci for building conda packages for OS X and Linux
  • Adds a Dockerfile

2.2.0

06 Aug 03:17
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  • Update subcommands to work with clingo 4.5.x
  • Output detailed differences for caspo design
  • Lazy optima computation in caspo learn
  • Add multi-threading from command line
  • Compute IO behaviors using multi-threading (multiprocessing)

2.1.1

30 Aug 11:39
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  • Bugfix in console handler for caspo design

2.1.0

28 Aug 14:22
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  • Bugfix in ASP encoding for caspo control
  • Implements caspo design from a list of experiments
  • Optionally relax hard constraint in caspo design
  • Implements random learner in caspo learn

Minor release

18 Apr 16:08
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  • Improve ASP encoding for caspo design
  • Use to_str method available in pyzcasp 1.0.1

2.0.0

24 Mar 11:36
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  • Complete refactoring (no backwards compatibility)
  • Introduce subcommands:
    • learn: learning logical networks
    • control: finding intervention strategies
    • analyze: compute I/O behaviors and basic stats
    • design: experimental design to discriminate I/O behaviors
    • visualize: dump results from other subcommands to dot files
  • Uses latest potassco tools: clingo >= 4.3.0, gringo >= 4.3.0 and clasp >= 3.0.2