Fixes files with exec bit set

benbu · Aug 27, 2013 · bc8cfdc · bc8cfdc
1 parent e79285d
commit bc8cfdc
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Showing 83 changed files with 4 additions and 70 deletions.
diff --git a/dist/common/splash/UV-CDAT_logo.tiff b/dist/common/splash/UV-CDAT_logo.tiff
diff --git a/dist/common/splash/UVCDAT_Logo_sites.pdf b/dist/common/splash/UVCDAT_Logo_sites.pdf
diff --git a/doc/vistrails.xsd b/doc/vistrails.xsd
diff --git a/packages/SciPy/MatlabReader.py b/packages/SciPy/MatlabReader.py
diff --git a/packages/SciPy/Matrix.py b/packages/SciPy/Matrix.py
diff --git a/packages/SciPy/MatrixConvert.py b/packages/SciPy/MatrixConvert.py
diff --git a/packages/SciPy/MatrixInfo.py b/packages/SciPy/MatrixInfo.py
diff --git a/packages/SciPy/MatrixOperations.py b/packages/SciPy/MatrixOperations.py
diff --git a/packages/SciPy/SciPy.py b/packages/SciPy/SciPy.py
diff --git a/packages/SciPy/__init__.py b/packages/SciPy/__init__.py
diff --git a/packages/pc3/info/ipaw/pc3/LoadAppLogic.py b/packages/pc3/info/ipaw/pc3/LoadAppLogic.py
diff --git a/packages/pc3/info/ipaw/pc3/LoadConstants.py b/packages/pc3/info/ipaw/pc3/LoadConstants.py
diff --git a/packages/pc3/info/ipaw/pc3/LoadSql.py b/packages/pc3/info/ipaw/pc3/LoadSql.py
diff --git a/packages/pc3/info/ipaw/pc3/LoadWorkflow.py b/packages/pc3/info/ipaw/pc3/LoadWorkflow.py
diff --git a/packages/stem/code/stem.library.A.R b/packages/stem/code/stem.library.A.R
diff --git a/packages/stem/code/stem.library.B.R b/packages/stem/code/stem.library.B.R
diff --git a/scripts/module_appearance/main.py b/scripts/module_appearance/main.py
@@ -1,37 +1,3 @@
-###############################################################################
-##
-## Copyright (C) 2006-2011, University of Utah. 
-## All rights reserved.
-## Contact: [email protected]
-##
-## This file is part of VisTrails.
-##
-## "Redistribution and use in source and binary forms, with or without 
-## modification, are permitted provided that the following conditions are met:
-##
-##  - Redistributions of source code must retain the above copyright notice, 
-##    this list of conditions and the following disclaimer.
-##  - Redistributions in binary form must reproduce the above copyright 
-##    notice, this list of conditions and the following disclaimer in the 
-##    documentation and/or other materials provided with the distribution.
-##  - Neither the name of the University of Utah nor the names of its 
-##    contributors may be used to endorse or promote products derived from 
-##    this software without specific prior written permission.
-##
-## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
-## AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, 
-## THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR 
-## PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR 
-## CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 
-## EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 
-## PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; 
-## OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, 
-## WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR 
-## OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF 
-## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE."
-##
-###############################################################################
-
 #!/usr/bin/env python
 ###############################################################################
 ##
@@ -66,6 +32,7 @@
 ## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE."
 ##
 ###############################################################################
+
 ##############################################################################
 # create_module_appearance.py helps VisTrails package developers customize
 # the appearance of modules in their packages.

diff --git a/vistrails/core/modules/package.py b/vistrails/core/modules/package.py
diff --git a/vistrails/core/resources/default_vistrails_startup b/vistrails/core/resources/default_vistrails_startup
diff --git a/vistrails/core/startup.py b/vistrails/core/startup.py
diff --git a/vistrails/gui/application_server.py b/vistrails/gui/application_server.py
diff --git a/vistrails/gui/bundles/linux_fedora_install.py b/vistrails/gui/bundles/linux_fedora_install.py
diff --git a/vistrails/gui/bundles/linux_ubuntu_install.py b/vistrails/gui/bundles/linux_ubuntu_install.py
diff --git a/vistrails/gui/module_annotation.py b/vistrails/gui/module_annotation.py
diff --git a/vistrails/gui/modules/module_configure.py b/vistrails/gui/modules/module_configure.py
diff --git a/vistrails/gui/modules/port_configure.py b/vistrails/gui/modules/port_configure.py
diff --git a/vistrails/gui/modules/resources/colorconfig_rc.py b/vistrails/gui/modules/resources/colorconfig_rc.py
diff --git a/vistrails/gui/pipeline_view.py b/vistrails/gui/pipeline_view.py
diff --git a/vistrails/gui/resources/images/camera.png b/vistrails/gui/resources/images/camera.png
diff --git a/vistrails/gui/resources/images/camera_mount.png b/vistrails/gui/resources/images/camera_mount.png
diff --git a/vistrails/gui/resources/images/copy.png b/vistrails/gui/resources/images/copy.png
diff --git a/vistrails/gui/resources/images/down.png b/vistrails/gui/resources/images/down.png
diff --git a/vistrails/gui/resources/images/dragging.png b/vistrails/gui/resources/images/dragging.png
diff --git a/vistrails/gui/resources/images/edit_add.png b/vistrails/gui/resources/images/edit_add.png
diff --git a/vistrails/gui/resources/images/editcopy.png b/vistrails/gui/resources/images/editcopy.png
diff --git a/vistrails/gui/resources/images/editdelete.png b/vistrails/gui/resources/images/editdelete.png
diff --git a/vistrails/gui/resources/images/export.png b/vistrails/gui/resources/images/export.png
diff --git a/vistrails/gui/resources/images/import.png b/vistrails/gui/resources/images/import.png
diff --git a/vistrails/gui/resources/images/make_kdevelop.png b/vistrails/gui/resources/images/make_kdevelop.png
diff --git a/vistrails/gui/resources/images/noatunloopsong.png b/vistrails/gui/resources/images/noatunloopsong.png
diff --git a/vistrails/gui/resources/images/pipeline_bg.png b/vistrails/gui/resources/images/pipeline_bg.png
diff --git a/vistrails/gui/resources/images/player_eject.png b/vistrails/gui/resources/images/player_eject.png
diff --git a/vistrails/gui/resources/images/player_pause.png b/vistrails/gui/resources/images/player_pause.png
diff --git a/vistrails/gui/resources/images/player_play.png b/vistrails/gui/resources/images/player_play.png
diff --git a/vistrails/gui/resources/images/undo.png b/vistrails/gui/resources/images/undo.png
diff --git a/vistrails/gui/resources/images/up.png b/vistrails/gui/resources/images/up.png
diff --git a/vistrails/gui/resources/images/version_bg.png b/vistrails/gui/resources/images/version_bg.png
diff --git a/vistrails/gui/resources/images/view_fullscreen.png b/vistrails/gui/resources/images/view_fullscreen.png
diff --git a/vistrails/gui/resources/images/vistrails_icon.png b/vistrails/gui/resources/images/vistrails_icon.png
diff --git a/vistrails/gui/resources/images/vistrails_icon_small.png b/vistrails/gui/resources/images/vistrails_icon_small.png
diff --git a/vistrails/gui/uvcdat/resources/icons/info.png b/vistrails/gui/uvcdat/resources/icons/info.png
diff --git a/vistrails/gui/uvcdat/resources/icons/source.png b/vistrails/gui/uvcdat/resources/icons/source.png
diff --git a/vistrails/index/indexworkflow.py b/vistrails/index/indexworkflow.py
@@ -1,37 +1,3 @@
-###############################################################################
-##
-## Copyright (C) 2006-2011, University of Utah. 
-## All rights reserved.
-## Contact: [email protected]
-##
-## This file is part of VisTrails.
-##
-## "Redistribution and use in source and binary forms, with or without 
-## modification, are permitted provided that the following conditions are met:
-##
-##  - Redistributions of source code must retain the above copyright notice, 
-##    this list of conditions and the following disclaimer.
-##  - Redistributions in binary form must reproduce the above copyright 
-##    notice, this list of conditions and the following disclaimer in the 
-##    documentation and/or other materials provided with the distribution.
-##  - Neither the name of the University of Utah nor the names of its 
-##    contributors may be used to endorse or promote products derived from 
-##    this software without specific prior written permission.
-##
-## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
-## AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, 
-## THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR 
-## PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR 
-## CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 
-## EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 
-## PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; 
-## OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, 
-## WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR 
-## OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF 
-## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE."
-##
-###############################################################################
-
 #!/usr/bin/python
 ###############################################################################
 ##

diff --git a/vistrails/packages/cdat/scripts/gen_init.py b/vistrails/packages/cdat/scripts/gen_init.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python
 ###############################################################################
 ##
 ## Copyright (C) 2006-2011, University of Utah. 

diff --git a/vistrails/packages/cdat/scripts/init_inc.py b/vistrails/packages/cdat/scripts/init_inc.py
diff --git a/vistrails/packages/cdat/scripts/tests/cdat_gui.py b/vistrails/packages/cdat/scripts/tests/cdat_gui.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python
 ###############################################################################
 ##
 ## Copyright (C) 2006-2011, University of Utah. 
@@ -32,7 +33,6 @@
 ##
 ###############################################################################
 
-#!/usr/bin/env python
 from PyQt4 import QtCore, QtGui
 import cdms2, vcs
 from cdatguiwrap import VCSQtManager

diff --git a/vistrails/packages/cdat/scripts/xml/cdms2.xml b/vistrails/packages/cdat/scripts/xml/cdms2.xml
diff --git a/vistrails/packages/spreadsheet/basic_widgets.py b/vistrails/packages/spreadsheet/basic_widgets.py
diff --git a/vistrails/packages/spreadsheet/init.py b/vistrails/packages/spreadsheet/init.py
diff --git a/vistrails/packages/spreadsheet/spreadsheet_base.py b/vistrails/packages/spreadsheet/spreadsheet_base.py
diff --git a/vistrails/packages/spreadsheet/spreadsheet_controller.py b/vistrails/packages/spreadsheet/spreadsheet_controller.py
diff --git a/vistrails/packages/spreadsheet/spreadsheet_event.py b/vistrails/packages/spreadsheet/spreadsheet_event.py
diff --git a/vistrails/packages/spreadsheet/spreadsheet_helpers.py b/vistrails/packages/spreadsheet/spreadsheet_helpers.py
diff --git a/vistrails/packages/spreadsheet/spreadsheet_rc.py b/vistrails/packages/spreadsheet/spreadsheet_rc.py
diff --git a/vistrails/packages/spreadsheet/spreadsheet_registry.py b/vistrails/packages/spreadsheet/spreadsheet_registry.py
diff --git a/vistrails/packages/spreadsheet/spreadsheet_sheet.py b/vistrails/packages/spreadsheet/spreadsheet_sheet.py
diff --git a/vistrails/packages/spreadsheet/spreadsheet_tab.py b/vistrails/packages/spreadsheet/spreadsheet_tab.py
diff --git a/vistrails/packages/spreadsheet/spreadsheet_tabcontroller.py b/vistrails/packages/spreadsheet/spreadsheet_tabcontroller.py
diff --git a/vistrails/packages/spreadsheet/spreadsheet_window.py b/vistrails/packages/spreadsheet/spreadsheet_window.py
diff --git a/vistrails/packages/spreadsheet/widgets/__init__.py b/vistrails/packages/spreadsheet/widgets/__init__.py
diff --git a/vistrails/packages/spreadsheet/widgets/imageviewer/__init__.py b/vistrails/packages/spreadsheet/widgets/imageviewer/__init__.py
diff --git a/vistrails/packages/spreadsheet/widgets/imageviewer/imageviewer.py b/vistrails/packages/spreadsheet/widgets/imageviewer/imageviewer.py
diff --git a/vistrails/packages/spreadsheet/widgets/imageviewer/imageviewer_rc.py b/vistrails/packages/spreadsheet/widgets/imageviewer/imageviewer_rc.py
diff --git a/vistrails/packages/spreadsheet/widgets/richtext/__init__.py b/vistrails/packages/spreadsheet/widgets/richtext/__init__.py
diff --git a/vistrails/packages/spreadsheet/widgets/richtext/richtext.py b/vistrails/packages/spreadsheet/widgets/richtext/richtext.py
diff --git a/vistrails/packages/spreadsheet/widgets/svg/__init__.py b/vistrails/packages/spreadsheet/widgets/svg/__init__.py
diff --git a/vistrails/packages/spreadsheet/widgets/svg/svg.py b/vistrails/packages/spreadsheet/widgets/svg/svg.py
diff --git a/vistrails/packages/spreadsheet/widgets/webview/__init__.py b/vistrails/packages/spreadsheet/widgets/webview/__init__.py
diff --git a/vistrails/packages/vtDV3D/HyperwallManager.py b/vistrails/packages/vtDV3D/HyperwallManager.py
diff --git a/vistrails/packages/vtDV3D/Main.py b/vistrails/packages/vtDV3D/Main.py
diff --git a/vistrails/packages/vtDV3D/hyperwall/iVisServer/main.py b/vistrails/packages/vtDV3D/hyperwall/iVisServer/main.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python2.5
+#!/usr/bin/env python
 
 import os, sys, argparse
 versionString = "v 0.0.1"

diff --git a/vistrails/packages/vtk/base_module.py b/vistrails/packages/vtk/base_module.py
diff --git a/vistrails/tests/resources/vtk.xml b/vistrails/tests/resources/vtk.xml