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Bugfix/kbdev 1133 incorrect matching#108

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mathieulemieux wants to merge 31 commits intomasterbcgsc/pori_graphkb_python:masterfrom bugfix/KBDEV-1133-incorrect-matchingbcgsc/pori_graphkb_python:bugfix/KBDEV-1133-incorrect-matchingCopy head branch name to clipboard

+6,470-263

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Commits on Nov 9, 2023

• Merge pull request #106 from bcgsc/master

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Commits on Nov 16, 2023

• Change args names in compare_positional_variants

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• Remove unwanted ToDo

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Commits on Nov 20, 2023

• Precision in compare_positional_variants docstring

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• Formatting and comment in match_positional_variant

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• Move up type filtering in match_positional_variant

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• Refac. type_screening to structural_type_screening

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• Fix type filtering in match_positional_variant

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• Convert variant_types_details filter obj to list

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• Black formating

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Commits on Nov 22, 2023

• Black formating

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• Fix match_positional_variant for small variants

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• Black formating

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• delinsSpecialHandling in match_positional_variant

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Commits on Nov 27, 2023

• Fix fusion bug in stripDisplayName()

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• Add ToDo in TestStripDisplayName

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• Remove SMALL_MUTATION_VARIANT_ALIASES from const.

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• Add more data to tests

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• Add structural_type_adjustment()

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• update match_positional_variant docstring

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  4e3073c

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• Fix match.py imports

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• Better comments in compare_positional_variants()

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• Fix structural_type_screening() return type hint

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• Refactor category_variant_similarTo()

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• Better comments in match_positional_variant()

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  973b7d0

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• More comments

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  8f84d2a

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• Refactoring delins handling in match_pos_var

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• Refactoring PV matching in match_pos_var

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• Refactor category_variant_extension()

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Commits on Jan 24, 2024

• Multiple stuff - need to be sorted later

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• deleting script files not to be commited

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