Development Branch #46
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…e in a branch called `experimental_analysis_branch`.
…e folders. Also updated the references to the data in the tests.
…ion. Also added new tests for the fetcher and updated references/tests.
…Also added new tests for the function and updated references/tests.
…pdated the references/tests.
… some basic tests.
… excluded columns. This fails to coerce the columns if there are nans in the column. Also added corresponding tests.
…neric methods for constraining types and removing unecessary columns. Also updated references/tests and added new tests.
…ke pandas DataFrame (same table headers) . Also added corresponding tests.
…c methods for constraining types and removing unecessary columns. Also updated references/tests and added new tests.
…or using the generic methods for constraining types and removing unecessary columns. Also updated references/tests and added new tests.
… uncompressing of files from urls. Also added some minimal tests.
…B/mmCIF parsed DataFrames. Also added corresponding tests.
…make it more generic and complete. Also updated references/tests and added new tests.
…setter methods used to interface a main class (e.g. PDB, mmCIF, DSSP, etc. - to be implemented). Also added corresponding tests.
…ter_structures` function that allows for additional filtering. Also updated references/tests and added new tests for the additional functions.
…ing/writting/downloading/selecting mmCIFs and PDBs. Also added corresponding tests.
…llows for additional filtering. Also updated references/tests and added new tests for the additional functions `get_rsa` and `get_rsa_class`.
…ing/downloading/selecting DSSPs. Also added corresponding tests.
… allows for additional filtering. Also updated references/tests and added new tests.
…ing/downloading/selecting SIFTS. Also added corresponding tests.
…_pdb_validation_to_table` (now `parse_validation_residues`) using the generic methods for constraining types. Also updated references/tests and added new tests.
… the use of `os.path...`.
…ing/downloading/selecting Validation Data. Also added corresponding tests and improved types consistency.
… functions to variants. Moved the tests accordingly.
…rapper methods/classes for accessing the various reading/downloading/selecting GFF annotations. Also improved the tests.
… moved the tests to 'test_variants.py'.
…ort) and improved some names for consistency
… are alternatives to Pandas `json_normalise` and are going to be used to flatten Ensembl/UniProt Variants tables. Also added corresponding tests.
…nges and added new functions. Also added some new tests.
…hing/selecting Variation Data. Also added corresponding tests and improved types consistency.
…_properties_pdbe` to the 'structures.py'. Removed unused functions. Also added new tests and made minor improvements for consistency.
…hod and increase consistency.
…will used to implemented 'modular' merger functions and a `Tables` class.
… accessing the various data (via Table Generators and Merging). Also added new tests. More to come.
…ull' used for table merging. Also added corresponding test.
…so added new tests.
… tests. More testing needed.
…bumped the versions of the modules.
This was referenced Oct 10, 2017
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Work towards having a more modular approach - #45
Still more work to on documentation and testing/CI.
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