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Add support for subpackage-specific compiler options (TriBITSPub#442)
As part of this I also: * Refactored the code some to be more maintainable NOTE: The tests I added are very strong but may not be 100% portable. The should only run with Linux, wtih Makefiles and with GCC and therefore should be okay. We only need to test this logic with one CMake generator and with compiler.
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