mods to Dockerfile

artic-network · Aug 21, 2024 · aa33d86 · aa33d86
1 parent e6a0a16
commit aa33d86
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -15,6 +15,9 @@ RUN sed -i 's/name: artic/name: base/' /tmp/env.yml
 RUN micromamba install --yes --file /tmp/env.yml && \
     micromamba clean --all --yes
 
+RUN pip uninstall -y tensorflow keras pyabpoa \
+  && conda install -y -c conda-forge tensorflow~=2.11 keras~=2.11
+
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 
 USER root
@@ -25,4 +28,4 @@ USER $MAMBA_USER
 
 ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]
 
-CMD ["/bin/bash"]
+CMD ["/bin/bash"]
diff --git a/environment.yml b/environment.yml
@@ -25,4 +25,4 @@ dependencies:
   - samtools
   - tqdm
   - pip:
-    - medaka
+    - medaka~=1.12.0
-Original file line number
+Diff line change
@@ Expand Up / @@ -25,4 +25,4 @@ dependencies: @@
       - samtools
       - tqdm
       - pip:
-        - medaka
+        - medaka~=1.12.0