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Add itm / welkers scheme support
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BioWilko committed Aug 22, 2024
1 parent c0638d9 commit 899a589
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Showing 8 changed files with 6,383 additions and 2 deletions.
176 changes: 176 additions & 0 deletions data/primer_schemes/MPXV/itm-mpox/v1.0.0/primer.bed
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ON563414.3 48 70 itm-mpox_1_LEFT_0 1 + AAAAATGTGTGACCCACGACCG
ON563414.3 2602 2624 itm-mpox_1_RIGHT_0 1 - CCGGGAACTTACGCTTTCAGAT
ON563414.3 2390 2412 itm-mpox_2_LEFT_0 2 + TGTTCTACACCCTGATGCTCCT
ON563414.3 4829 4852 itm-mpox_2_RIGHT_0 2 - TCCACCCACCTTTCTTGAAATGA
ON563414.3 4588 4610 itm-mpox_3_LEFT_0 1 + GTTAACGATGCGCACAATCTCG
ON563414.3 7025 7047 itm-mpox_3_RIGHT_0 1 - TAGTGAGAGCGAGAGTGACAGT
ON563414.3 6807 6829 itm-mpox_4_LEFT_0 2 + GTAGCAGTAGTTGGTGCATGGT
ON563414.3 9250 9275 itm-mpox_4_RIGHT_0 2 - TGTGTCCTCTCCTCTTATAACATCG
ON563414.3 9083 9109 itm-mpox_5_LEFT_0 1 + AATAGTCTGTAGACCTTTATCGTCGT
ON563414.3 11491 11514 itm-mpox_5_RIGHT_0 1 - ACTGCTAGAATCCGGTTCAGATG
ON563414.3 11251 11273 itm-mpox_6_LEFT_0 2 + AGCGTTGACTTATGGACTCTGG
ON563414.3 13804 13826 itm-mpox_6_RIGHT_0 2 - TACCTATCCAACGACAGGCACT
ON563414.3 13625 13647 itm-mpox_7_LEFT_0 1 + CACTGTAAGCATGTCCGTACCA
ON563414.3 16063 16086 itm-mpox_7_RIGHT_0 1 - TGAGAACGAGCTCTTCAAACACT
ON563414.3 15861 15883 itm-mpox_8_LEFT_0 2 + TTGCGGACATGTTACACTCCTT
ON563414.3 18289 18311 itm-mpox_8_RIGHT_0 2 - ACTATGGATCCCCACCACTTGA
ON563414.3 18097 18119 itm-mpox_9_LEFT_0 1 + AGGCTATGTTTCGCCCATCATC
ON563414.3 20586 20610 itm-mpox_9_RIGHT_0 1 - GTCCTTTACGATGAGCTCAAATGT
ON563414.3 20374 20396 itm-mpox_10_LEFT_0 2 + TCGCCGTCATTTCTCCAAAGAA
ON563414.3 22843 22865 itm-mpox_10_RIGHT_0 2 - TCTGTTGTTTACCACTCAGCGG
ON563414.3 22585 22607 itm-mpox_11_LEFT_0 1 + TGTCACTCCATAACTACCACGC
ON563414.3 25150 25174 itm-mpox_11_RIGHT_0 1 - AGTTTCGTCGATAGTACTGTGTGT
ON563414.3 24887 24909 itm-mpox_12_LEFT_0 2 + GGAACCGTTTTCGTACCGTACT
ON563414.3 27374 27396 itm-mpox_12_RIGHT_0 2 - AGTCAGGTCTTGAAGGCTACCA
ON563414.3 27208 27232 itm-mpox_13_LEFT_0 1 + TCCTTATGAAGATGATGTTTGGCG
ON563414.3 29587 29609 itm-mpox_13_RIGHT_0 1 - CCCTCCTGGAGAACGACAGTTA
ON563414.3 29305 29328 itm-mpox_14_LEFT_0 2 + TGATCCAAACCCTTGATCTCCTC
ON563414.3 31879 31901 itm-mpox_14_RIGHT_0 2 - ACGGATTTCAGATGGCCATTGA
ON563414.3 31661 31683 itm-mpox_15_LEFT_0 1 + TGGAAGCGAATGATCCGGAAAA
ON563414.3 34161 34183 itm-mpox_15_RIGHT_0 1 - TCCGTGGTTTCTAGTGGGTGTA
ON563414.3 33956 33978 itm-mpox_16_LEFT_0 2 + GGCTGCTCCTGTTCTTGTAGTC
ON563414.3 36418 36440 itm-mpox_16_RIGHT_0 2 - GATAACGCCAAAATCGCTGCTC
ON563414.3 36186 36210 itm-mpox_17_LEFT_0 1 + ACCTTGGCTGTCTCATTCAATAGG
ON563414.3 38628 38650 itm-mpox_17_RIGHT_0 1 - TGAATGGCTGTCGTCAAAAGGT
ON563414.3 38411 38433 itm-mpox_18_LEFT_0 2 + AAATTCGCGCCCACAATTCATC
ON563414.3 40934 40956 itm-mpox_18_RIGHT_0 2 - TCGCCGTTTCATTTTCAACAGC
ON563414.3 40740 40765 itm-mpox_19_LEFT_0 1 + AGGCTTCCAAAAATTTTTCATCCGT
ON563414.3 43247 43269 itm-mpox_19_RIGHT_0 1 - ACGTCGCTGTAATAGACAAGGC
ON563414.3 43046 43075 itm-mpox_20_LEFT_0 2 + AGAAATGCCAAATCTATAAGAAAAGTCCT
ON563414.3 45479 45503 itm-mpox_20_RIGHT_0 2 - CCTTTATCAACAAGGAAAGCGTGT
ON563414.3 45260 45282 itm-mpox_21_LEFT_0 1 + CCCTAGGACGAACTACTGCCAT
ON563414.3 47687 47709 itm-mpox_21_RIGHT_0 1 - TTGTGCTGCTCTTATCGTCTGA
ON563414.3 47509 47536 itm-mpox_22_LEFT_0 2 + TCGTATTGTGGTTATATGGCTACAATT
ON563414.3 50003 50025 itm-mpox_22_RIGHT_0 2 - TGAATTGTTGCAACGGTTTCCA
ON563414.3 49729 49754 itm-mpox_23_LEFT_0 1 + AAAAACCCTAGTATTCTTCCATCGC
ON563414.3 52309 52331 itm-mpox_23_RIGHT_0 1 - AACGGTATGTTACGGTTTGCCA
ON563414.3 52123 52146 itm-mpox_24_LEFT_0 2 + TCAGTCGTTCTAACTCCTTTGCT
ON563414.3 54553 54575 itm-mpox_24_RIGHT_0 2 - CACGCTTCTATGTTGCCGTCTA
ON563414.3 54371 54393 itm-mpox_25_LEFT_0 1 + CTCGCCATTTCGACATCTGGAT
ON563414.3 56825 56847 itm-mpox_25_RIGHT_0 1 - CGGGACCAAATGTAGTCAAGCT
ON563414.3 56557 56581 itm-mpox_26_LEFT_0 2 + AGACAGAATATCGTGAACAGGTGG
ON563414.3 59133 59156 itm-mpox_26_RIGHT_0 2 - TGTTTCGACTGGAGAATCATCCA
ON563414.3 58940 58962 itm-mpox_27_LEFT_0 1 + ACGCGTTCACTATCTCCAGAGA
ON563414.3 61420 61442 itm-mpox_27_RIGHT_0 1 - TACGCACGCTTCTCCTACCTTA
ON563414.3 61146 61168 itm-mpox_28_LEFT_0 2 + TAACTCCAGGCCGTTTGTTTCC
ON563414.3 63698 63722 itm-mpox_28_RIGHT_0 2 - TTGTGTACCAGAACTCCACCTAAA
ON563414.3 63523 63547 itm-mpox_29_LEFT_0 1 + TTGACTTTTTGGTCCACTTTTCCA
ON563414.3 65943 65965 itm-mpox_29_RIGHT_0 1 - ATATTCGTGACACTGTGCAACG
ON563414.3 65714 65736 itm-mpox_30_LEFT_0 2 + CTGCCACGTTAGAGGATGACAG
ON563414.3 68146 68168 itm-mpox_30_RIGHT_0 2 - ACTAACGTTTCTTAGCGGAGGC
ON563414.3 67967 67989 itm-mpox_31_LEFT_0 1 + TCCGGACATGATGGTAAAGACC
ON563414.3 70382 70404 itm-mpox_31_RIGHT_0 1 - AACGAATTCTGCGTCTCGTTCA
ON563414.3 70125 70149 itm-mpox_32_LEFT_0 2 + CAAGACGTTAGAGACAAGAGACGT
ON563414.3 72685 72707 itm-mpox_32_RIGHT_0 2 - CAACGCCACAGATTTCTGGAGA
ON563414.3 72417 72439 itm-mpox_33_LEFT_0 1 + TAGGCTCACCGATGATCATTGG
ON563414.3 75003 75025 itm-mpox_33_RIGHT_0 1 - AACACAGCATCCAACTGAGCAT
ON563414.3 74810 74832 itm-mpox_34_LEFT_0 2 + GCTATTTAAATGGGTGCCGCAG
ON563414.3 77307 77329 itm-mpox_34_RIGHT_0 2 - GGTGATGATCCTTGACGGAAGA
ON563414.3 77111 77133 itm-mpox_35_LEFT_0 1 + ACAGGGGCAATGTTTACCACAA
ON563414.3 79597 79619 itm-mpox_35_RIGHT_0 1 - CTAGACGCCACGGGGTTTAAAA
ON563414.3 79386 79408 itm-mpox_36_LEFT_0 2 + GGCCGCCATCATGATCCTATTC
ON563414.3 81853 81875 itm-mpox_36_RIGHT_0 2 - TTACCGCCTTCTGGATAACCTG
ON563414.3 81588 81612 itm-mpox_37_LEFT_0 1 + TTGTTTCGTCAACAAGTTGGATGA
ON563414.3 84064 84089 itm-mpox_37_RIGHT_0 1 - CGGATACCAGAGTGATAATTTCGGT
ON563414.3 83901 83923 itm-mpox_38_LEFT_0 2 + AGGTGGTGGAACTCCTATTGGA
ON563414.3 86316 86338 itm-mpox_38_RIGHT_0 2 - CACCGCTTCGAAACCATGAAAC
ON563414.3 86062 86084 itm-mpox_39_LEFT_0 1 + CCGCATTGGTGTTCCGATCTTA
ON563414.3 88513 88535 itm-mpox_39_RIGHT_0 1 - TGAACCTGAGGCATGGAAAAGG
ON563414.3 88323 88345 itm-mpox_40_LEFT_0 2 + TCACGTCAGCGGCATCTAAATT
ON563414.3 90775 90800 itm-mpox_40_RIGHT_0 2 - TTCATGTGAAACTTTGTCCTTTCCT
ON563414.3 90609 90634 itm-mpox_41_LEFT_0 1 + CCACAGATTCCAATTATCAGTTGGC
ON563414.3 92985 93010 itm-mpox_41_RIGHT_0 1 - AGACGACTCTCCAAAGATAATTGGT
ON563414.3 92702 92724 itm-mpox_42_LEFT_0 2 + AGCCCGTAAATGCAATCAGTGA
ON563414.3 95299 95321 itm-mpox_42_RIGHT_0 2 - GCCGTTAAACCAAGCGAATACA
ON563414.3 95041 95066 itm-mpox_43_LEFT_0 1 + TGTACAGGTACCTCCATCATTAGGA
ON563414.3 97581 97603 itm-mpox_43_RIGHT_0 1 - TTGGTTGTCGACTTCCCAGTTG
ON563414.3 97373 97395 itm-mpox_44_LEFT_0 2 + ACGTGTACTGTATCGACCGGAT
ON563414.3 99843 99865 itm-mpox_44_RIGHT_0 2 - ACGGGTTCAGAAATATCGACGT
ON563414.3 99679 99702 itm-mpox_45_LEFT_0 1 + TCCTGAAAACGATGATGGCAATC
ON563414.3 102100 102123 itm-mpox_45_RIGHT_0 1 - AACTCTTCGAAGTGAGGATCGAT
ON563414.3 101884 101906 itm-mpox_46_LEFT_0 2 + CCAAGATCAAAAGACACGCACG
ON563414.3 104341 104363 itm-mpox_46_RIGHT_0 2 - TTGATGATGTGGAAGGGTCTGC
ON563414.3 104156 104178 itm-mpox_47_LEFT_0 1 + CTCCCGGATCACGATTTTGTCT
ON563414.3 106541 106563 itm-mpox_47_RIGHT_0 1 - GAACATATAGCGACGCCACCAA
ON563414.3 106293 106315 itm-mpox_48_LEFT_0 2 + AGATGGGCCCGTTCTCTGAATA
ON563414.3 108802 108827 itm-mpox_48_RIGHT_0 2 - TGTAGCTGTTGTAGACATAACGGTA
ON563414.3 108580 108602 itm-mpox_49_LEFT_0 1 + TTGCATCTACATCATCCGTGGA
ON563414.3 111000 111022 itm-mpox_49_RIGHT_0 1 - AATGGAAGCCGTGGTCAATAGC
ON563414.3 110743 110765 itm-mpox_50_LEFT_0 2 + GCTACTTCGTCGATGGAAACCA
ON563414.3 113303 113325 itm-mpox_50_RIGHT_0 2 - TCCTTAAATCTGGTGCCGTTGT
ON563414.3 113103 113125 itm-mpox_51_LEFT_0 1 + TCTCTGTAGTCGACGCTCTCAA
ON563414.3 115547 115570 itm-mpox_51_RIGHT_0 1 - ACGGCCGGAAATAGTTAAGAGAC
ON563414.3 115326 115348 itm-mpox_52_LEFT_0 2 + AACCAAAAAGTCACACGCTCCA
ON563414.3 117752 117774 itm-mpox_52_RIGHT_0 2 - TTCTATGCAGGATCTCCCGAAG
ON563414.3 117543 117565 itm-mpox_53_LEFT_0 1 + GTTGTATGGCATTGCGCAGAAA
ON563414.3 120022 120044 itm-mpox_53_RIGHT_0 1 - CAAGGATGGTGTTTGTGTTGGC
ON563414.3 119757 119779 itm-mpox_54_LEFT_0 2 + GAGAACATAATGCCGCCGTAGT
ON563414.3 122339 122361 itm-mpox_54_RIGHT_0 2 - TGACGTACATCCAGGAGAACCT
ON563414.3 122157 122179 itm-mpox_55_LEFT_0 1 + CTGACAATGTACTGGGCCATGT
ON563414.3 124629 124654 itm-mpox_55_RIGHT_0 1 - ACATCATCGGAGGATAATACGCTAA
ON563414.3 124346 124368 itm-mpox_56_LEFT_0 2 + CACACACGGCAGAAAAACCATC
ON563414.3 126828 126850 itm-mpox_56_RIGHT_0 2 - GTTCCGTTCCCATCATAGTCGT
ON563414.3 126605 126627 itm-mpox_57_LEFT_0 1 + TTGGGAGAACTTAAGCGGCAAG
ON563414.3 129095 129117 itm-mpox_57_RIGHT_0 1 - AAACGATAAGAGTGGCCGCTTG
ON563414.3 128899 128922 itm-mpox_58_LEFT_0 2 + GAAACGGAATCGGTAGATCGTCT
ON563414.3 131375 131397 itm-mpox_58_RIGHT_0 2 - CATAGCGTCTCCGGATTCCAAG
ON563414.3 131133 131155 itm-mpox_59_LEFT_0 1 + AAGATTGCGGCTAATTGCTTCG
ON563414.3 133667 133689 itm-mpox_59_RIGHT_0 1 - GAGGGAATTGACTCGCGAAAGA
ON563414.3 133459 133481 itm-mpox_60_LEFT_0 2 + ACTCGACGAGCTCACGTTTAAG
ON563414.3 135878 135900 itm-mpox_60_RIGHT_0 2 - GTTCGACGATTAACGGAGAGCA
ON563414.3 135639 135661 itm-mpox_61_LEFT_0 1 + ACAGAACAATTAGAGCGGCAGG
ON563414.3 138158 138182 itm-mpox_61_RIGHT_0 1 - ACACGATGCGACAATGTATAGACT
ON563414.3 137959 137981 itm-mpox_62_LEFT_0 2 + GCTTCGCGTTTAGTCTCTGGAT
ON563414.3 140456 140478 itm-mpox_62_RIGHT_0 2 - TCGATGCCTGTAAAGGGGAAAC
ON563414.3 140200 140228 itm-mpox_63_LEFT_0 1 + GACGATGATGATTGATCACTATTACACA
ON563414.3 142681 142703 itm-mpox_63_RIGHT_0 1 - AATCCATCCATTGCCGTCTGAT
ON563414.3 142478 142500 itm-mpox_64_LEFT_0 2 + ACCATCATCATAGCATGCGACT
ON563414.3 144918 144940 itm-mpox_64_RIGHT_0 2 - GTGTTTGGTTGCGTTATTGCCA
ON563414.3 144705 144727 itm-mpox_65_LEFT_0 1 + TCAATCCCAAACCCAAAACCGT
ON563414.3 147236 147258 itm-mpox_65_RIGHT_0 1 - CCCAGTAAGCAACTCCATAGCA
ON563414.3 147038 147060 itm-mpox_66_LEFT_0 2 + TAATAAGTTCGAGGATGCCGCC
ON563414.3 149497 149520 itm-mpox_66_RIGHT_0 2 - TTTTCCATGGACTTGTTCAACGT
ON563414.3 149268 149292 itm-mpox_67_LEFT_0 1 + ACTTTCGAGGTTATTGGTTGTGGA
ON563414.3 151784 151806 itm-mpox_67_RIGHT_0 1 - GCATACGCTACTCCAGAGAACG
ON563414.3 151501 151523 itm-mpox_68_LEFT_0 2 + ATGTCTCGTGGGGCATTAATCG
ON563414.3 153997 154019 itm-mpox_68_RIGHT_0 2 - ACCGGATTCATCGTCGTAACAA
ON563414.3 153796 153823 itm-mpox_69_LEFT_0 1 + TGATGCACTAACGAGAAAATTAGAAGG
ON563414.3 156278 156305 itm-mpox_69_RIGHT_0 1 - ACTTAAACCACCATCAAAAATCCATGT
ON563414.3 156003 156031 itm-mpox_70_LEFT_0 2 + AGACTAGTGTATGTGGAAATGTCATAGA
ON563414.3 158540 158567 itm-mpox_70_RIGHT_0 2 - TCGGATTATAGCTAAGGACTAGATTCG
ON563414.3 158363 158385 itm-mpox_71_LEFT_0 1 + GGTGGAGTCGTTAAAGGTGACA
ON563414.3 160847 160869 itm-mpox_71_RIGHT_0 1 - TGCCTTGCATGTGATAAGACCT
ON563414.3 160648 160672 itm-mpox_72_LEFT_0 2 + GCAAAAATCAATGGGTCGTTGGAC
ON563414.3 163064 163086 itm-mpox_72_RIGHT_0 2 - GTGACACCCATTCATCTGGAGA
ON563414.3 162800 162822 itm-mpox_73_LEFT_0 1 + ATTGGATTCACGGTGGGTCATG
ON563414.3 165277 165299 itm-mpox_73_RIGHT_0 1 - TCACAGACAGCATTTGGATCCA
ON563414.3 165064 165086 itm-mpox_74_LEFT_0 2 + TCCTTTTAGTGCTCGACAGTGT
ON563414.3 167473 167495 itm-mpox_74_RIGHT_0 2 - ACATTGTTTGCCACGTCTTGAT
ON563414.3 167220 167242 itm-mpox_75_LEFT_0 1 + ATTCGATCGTCATGGGCATAGT
ON563414.3 169693 169722 itm-mpox_75_RIGHT_0 1 - TGTATCTGAATCCATGTTAGTAGTAAGCA
ON563414.3 169497 169524 itm-mpox_76_LEFT_0 2 + TCTTCCGATATCTACAAGGATATTCCA
ON563414.3 171919 171941 itm-mpox_76_RIGHT_0 2 - ACGGATGATCTGCACAGAACTC
ON563414.3 171744 171767 itm-mpox_77_LEFT_0 1 + GTTGGGACTGACAGATGTGTTCT
ON563414.3 174051 174073 itm-mpox_77_RIGHT_0 1 - TGTATCGCATTCCACCCTTTCC
ON563414.3 173860 173884 itm-mpox_78_LEFT_0 2 + CTCATGTTCTTGTGTAATCGCAGT
ON563414.3 176270 176293 itm-mpox_78_RIGHT_0 2 - TGTTCTGCGTCATCTACATCTGA
ON563414.3 176075 176099 itm-mpox_79_LEFT_0 1 + GATAGATCAGTGGGTGTCCATGAT
ON563414.3 178532 178554 itm-mpox_79_RIGHT_0 1 - GTGTTGGGTACGACCGCTTATA
ON563414.3 178279 178303 itm-mpox_80_LEFT_0 2 + AGCGAGAGATCTAGCAACTAGAGT
ON563414.3 180885 180907 itm-mpox_80_RIGHT_0 2 - TCGAGTCATTTTACGCACGGTT
ON563414.3 180719 180741 itm-mpox_81_LEFT_0 1 + CACCTGATGGTCTGGACATACC
ON563414.3 183172 183194 itm-mpox_81_RIGHT_0 1 - ACTACGTCCTTTTGCCATTGCA
ON563414.3 182929 182951 itm-mpox_82_LEFT_0 2 + GCTCAATCTGCCAGGATCAAGT
ON563414.3 185438 185460 itm-mpox_82_RIGHT_0 2 - TCAATGGAGCAGGAAAATGGGT
ON563414.3 185247 185269 itm-mpox_83_LEFT_0 1 + CCACATTGGCTAGAGGAATGCC
ON563414.3 187651 187673 itm-mpox_83_RIGHT_0 1 - TGATAAGCGACGCCATTCATGT
ON563414.3 187465 187487 itm-mpox_84_LEFT_0 2 + GACCTCACAACACAGTGCAAGA
ON563414.3 189901 189926 itm-mpox_84_RIGHT_0 2 - CCAGCTAACATAAGAGCCAATCTCA
ON563414.3 189634 189660 itm-mpox_85_LEFT_0 1 + ACTAAATCTCCTTCATGCTCTCTCAC
ON563414.3 192197 192219 itm-mpox_85_RIGHT_0 1 - ACCTGCTCGGTTACTTCTGTGT
ON563414.3 191933 191959 itm-mpox_86_LEFT_0 2 + AAAACCATGATGTGATAAAGCTCTGT
ON563414.3 194505 194526 itm-mpox_86_RIGHT_0 2 - CCATTGGATGGTGCATGTGGT
ON563414.3 194280 194302 itm-mpox_87_LEFT_0 1 + CCAAGCTAAGCGACTACCATCT
ON563414.3 196724 196749 itm-mpox_87_RIGHT_0 1 - TGATGCAATTGTCTGACAACCTAGA
ON563414.3 194581 194603 itm-mpox_88_LEFT_0 2 + CCGGGAACTTACGCTTTCAGAT
ON563414.3 197135 197157 itm-mpox_88_RIGHT_0 2 - AAAAATGTGTGACCCACGACCG
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