remove the usage: scanpy [-h] {settings} ...

There are a few packages providing commands. Try e.g. `pip install scanpy-
scripts`!

positional arguments:
  {settings}

options:
  -h, --help  show this help message and exit in pySTAGATE

spateo/tools/cluster/_stagate.py

@@ -1,5 +1,5 @@
 """Module providing a encapsulation of pySTAGATE."""
-import scanpy as sc
+
 import torch
 import torch.nn.functional as F
 from anndata import AnnData
@@ -147,6 +147,7 @@ def cal_pSM(
         """
 
         import numpy as np
+        import scanpy as sc
         from scipy.spatial import distance_matrix
 
         sc.pp.neighbors(self.adata, n_neighbors=n_neighbors, use_rep="STAGATE")