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topepo committed Dec 11, 2023
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2 changes: 1 addition & 1 deletion .nojekyll
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3,614 changes: 3,614 additions & 0 deletions chapters/categorical-predictors.html
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9 changes: 7 additions & 2 deletions chapters/contributing.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.4.521">
<meta name="generator" content="quarto-1.4.510">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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"search-more-match-text": "more match in this document",
"search-more-matches-text": "more matches in this document",
"search-clear-button-title": "Clear",
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"search-detached-cancel-button-title": "Cancel",
"search-submit-button-title": "Submit",
"search-label": "Search"
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<a href="../chapters/initial-data-splitting.html" class="sidebar-item-text sidebar-link">
<span class="menu-text"><span class="chapter-number">3</span>&nbsp; <span class="chapter-title">Initial Data Splitting</span></span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../chapters/numeric-predictors.html" class="sidebar-item-text sidebar-link">
<span class="menu-text"><span class="chapter-number">4</span>&nbsp; <span class="chapter-title">Transforming Numeric Predictors</span></span></a>
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<span class="sidebar-item-text sidebar-link text-start">
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15 changes: 7 additions & 8 deletions chapters/initial-data-splitting.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.4.521">
<meta name="generator" content="quarto-1.4.510">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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"search-more-match-text": "more match in this document",
"search-more-matches-text": "more matches in this document",
"search-clear-button-title": "Clear",
"search-text-placeholder": "",
"search-detached-cancel-button-title": "Cancel",
"search-submit-button-title": "Submit",
"search-label": "Search"
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</div>
</div>
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-tbl" id="tbl-ames-numeric-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<figcaption class="table quarto-float-caption quarto-float-tbl" id="tbl-ames-numeric-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Table&nbsp;3.1: A summary of numeric predictors in the Ames housing data.
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</div>
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<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-tbl" id="tbl-ames-categorical-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<figcaption class="table quarto-float-caption quarto-float-tbl" id="tbl-ames-categorical-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Table&nbsp;3.2: A summary of categorical predictors in the Ames housing data.
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<p>Let’s use the Ames data to demonstrate stratification. The outcome is the sale price of a house. <a href="#fig-ames-splitting" class="quarto-xref">Figure&nbsp;<span>3.1</span></a>(a) shows the distribution of the outcomes with vertical lines that separate 20% partitions of the data. Panel (b) shows that the outcome distributions are nearly identical after partitioning into training and testing sets.</p>
<div class="cell" data-layout-align="center">
<div class="cell-output-display">
<div id="fig-ames-splitting" class="quarto-figure quarto-figure-center anchored" width="95%" data-fig-align="center">
<div id="fig-ames-splitting" class="quarto-figure quarto-figure-center anchored" data-fig-align="center" width="95%">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-ames-splitting-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="../figures/fig-ames-splitting-1.svg" class="img-fluid quarto-figure quarto-figure-center figure-img" style="width:95.0%">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-ames-splitting-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-ames-splitting-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure&nbsp;3.1: (a) A density plot of the sale price of houses in Ames with vertical lines that indicate regions that cover 20% of the data. The ‘rug’ on the axis shows the individual data points. (b) Density plots of the training set outcomes (solid red) and test set outcomes (dashed blue) for the Ames data.
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<p><a href="#fig-ames-selection" class="quarto-xref">Figure&nbsp;<span>3.2</span></a> illustrates this process for the Ames housing data. Starting with a data point near the middle of the town, dissimilarity sampling selected 50 data points using scaled longitude and latitude as predictors. As the sampling proceeds, the algorithm initially chooses samples near the outskirts of the data, especially if they are outliers. Overall, the selected data points cover the space with no redundancy.</p>
<div class="cell" data-layout-align="center">
<div class="cell-output-display">
<div id="fig-ames-selection" class="quarto-figure quarto-figure-center anchored" width="70%" data-fig-align="center">
<div id="fig-ames-selection" class="quarto-figure quarto-figure-center anchored" data-fig-align="center" width="70%">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-ames-selection-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="../premade/anime_ames_selection.gif" class="img-fluid quarto-figure quarto-figure-center figure-img" style="width:70.0%">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-ames-selection-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-ames-selection-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure&nbsp;3.2: Maximum dissimilarity sampling of 25 points in the Ames data. The small black circles are individual properties. Larger, lighter colors indidicate earlier selection.
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15 changes: 7 additions & 8 deletions chapters/introduction.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.4.521">
<meta name="generator" content="quarto-1.4.510">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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"search-more-match-text": "more match in this document",
"search-more-matches-text": "more matches in this document",
"search-clear-button-title": "Clear",
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"search-detached-cancel-button-title": "Cancel",
"search-submit-button-title": "Submit",
"search-label": "Search"
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</div>
</div>
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-tbl" id="tbl-deliveries-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<figcaption class="table quarto-float-caption quarto-float-tbl" id="tbl-deliveries-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Table&nbsp;1.1: A random selection of several rows from a tabular data set on food delivery times.
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<div aria-describedby="fig-cells-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="../premade/cells.png" class="img-fluid quarto-figure quarto-figure-center figure-img" style="width:40.0%">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-cells-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-cells-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure&nbsp;1.1: An example image of several cells using two colors. Image from <span class="citation" data-cites="Yucells">Yu et al. (<a href="#ref-Yucells" role="doc-biblioref">2007</a>)</span>.
</figcaption>
</figure>
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<div aria-describedby="fig-segmented-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="../premade/segmented.png" class="img-fluid quarto-figure quarto-figure-center figure-img" style="width:40.0%">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-segmented-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-segmented-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure&nbsp;1.2: The cell segmentation results for the four neuroblastomas shown in <a href="#fig-cells" class="quarto-xref">Figure&nbsp;<span>1.1</span></a>.
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</figure>
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</div>
</div>
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<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-tbl" id="tbl-cells-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<figcaption class="table quarto-float-caption quarto-float-tbl" id="tbl-cells-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Table&nbsp;1.2: Cells, such as those found in <a href="#fig-cells" class="quarto-xref">Figure&nbsp;<span>1.1</span></a>, translated into a tabular format using three features for the nuclear and non-nuclear regions of the segmented cells.
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</div>
</div>
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-tbl" id="tbl-sanderson-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<figcaption class="table quarto-float-caption quarto-float-tbl" id="tbl-sanderson-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Table&nbsp;1.3: An example of converting non-numeric data to a numeric, tabular format.
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</figure>
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<div aria-describedby="fig-vgg16-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="../premade/vgg16.jpg" class="img-fluid quarto-figure quarto-figure-center figure-img" style="width:100.0%">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-vgg16-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-vgg16-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure&nbsp;1.3: A simplified version of the convolutional neural network deep learning model proposed by <span class="citation" data-cites="simonyan2014very">Simonyan and Zisserman (<a href="#ref-simonyan2014very" role="doc-biblioref">2014</a>)</span>. This version only includes a single dense layer (instead of four).
</figcaption>
</figure>
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3 changes: 1 addition & 2 deletions chapters/news.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.4.521">
<meta name="generator" content="quarto-1.4.510">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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"search-more-match-text": "more match in this document",
"search-more-matches-text": "more matches in this document",
"search-clear-button-title": "Clear",
"search-text-placeholder": "",
"search-detached-cancel-button-title": "Cancel",
"search-submit-button-title": "Submit",
"search-label": "Search"
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