PyPop 1.0.1

Install via PyPI

pip install -U pypop-genomics

1.0.1 - 2024-02-11

Features

• Add [CustomBinning] filtering unit tests for G and P-codes by @alexlancaster (#186)

Bug Fixes

• switch to scientific notation when frequencies can't be displayed as decimals by @alexlancaster (#192)
• Port [RandomBinningFilter] to Python 3, include more complex filtering tests by @alexlancaster (#187)

Internal

• Bump the cibuildwheel version from 2.16.4 to 2.16.5: fixes Windows CI builds by @dependabot (#189)
• Bump the version of cibuildwheel from 2.16.2 to 2.16.4 by @dependabot (#188)
• increase test strictness: make test warnings into errors by @alexlancaster (#185)
• Enable wheels on aarch64 architecture by @alexlancaster (#184)
• Update actions/upload-artifact from 3 to 4 in Build on ARM64 by @dependabot (#183)
• Streamline continuous integration: reduce number of wheels, concurrency by @alexlancaster (#182)
• Parallelize wheel builds, re-enable musllinux wheels for Python 3.9+ by @alexlancaster (#181)
• Update lxml requirement from <=5.0.0 to <=5.1.0; disable PyPy 3.7 on Linux by @dependabot (#178)
• Update numpy requirement from <=1.26.2 to <=1.26.3 by @dependabot (#177)
• Update lxml requirement from <=4.9.4 to <=5.0.0 by @dependabot (#174)
• Update lxml requirement from <=4.9.3 to <=4.9.4 by @dependabot (#173)
• update to v4 of download-artifact / upload-artifact by @alexlancaster (#172)
• Bump actions/setup-python from 4 to 5 by @dependabot (#168)
• Update numpy requirement from <=1.26.1 to <=1.26.2 by @dependabot (#167)

Documentation

• Link to new preprint in docs by @alexlancaster (#190)
• Convert bibliography to bibtex by @alexlancaster (#176)
• Convert NEWS.rst to NEWS.md, improve PDF documentation output by @alexlancaster (#175)

A full history of changes is available in NEWS.md.

Full Changelog: v1.0.0...v1.0.1