Notebook check part 2

aertslab · Oct 9, 2024 · ec31d34 · ec31d34
1 parent b01f757
commit ec31d34
Showing 1 changed file with 21 additions and 14 deletions.
diff --git a/docs/tutorials/enhancer_code_analysis.ipynb b/docs/tutorials/enhancer_code_analysis.ipynb
@@ -811,7 +811,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 233,
+   "execution_count": 15,
    "metadata": {},
    "outputs": [
     {
@@ -849,7 +849,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 243,
+   "execution_count": 16,
    "metadata": {},
    "outputs": [
     {
@@ -876,7 +876,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 235,
+   "execution_count": 17,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -895,7 +895,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 236,
+   "execution_count": 18,
    "metadata": {},
    "outputs": [
     {
@@ -942,15 +942,15 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 237,
+   "execution_count": 19,
    "metadata": {},
    "outputs": [
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "/data/projects/c04/cbd-saerts/nkemp/software/CREsted/src/crested/tl/_tfmodisco.py:1122: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning.\n",
-      "  \n"
+      "/data/projects/c04/cbd-saerts/nkemp/software/CREsted/src/crested/tl/modisco/_tfmodisco.py:1167: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning.\n",
+      "  mean_expression_per_cell_type: pd.DataFrame = gene_expression_df.groupby(\n"
      ]
     }
    ],
@@ -964,7 +964,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 238,
+   "execution_count": 20,
    "metadata": {},
    "outputs": [
     {
@@ -1589,7 +1589,7 @@
        "[19 rows x 24275 columns]"
       ]
      },
-     "execution_count": 238,
+     "execution_count": 20,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -1607,7 +1607,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 239,
+   "execution_count": 21,
    "metadata": {},
    "outputs": [
     {
@@ -1640,7 +1640,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 240,
+   "execution_count": 22,
    "metadata": {},
    "outputs": [
     {
@@ -1980,7 +1980,7 @@
        "[22476 rows x 15 columns]"
       ]
      },
-     "execution_count": 240,
+     "execution_count": 22,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -2008,7 +2008,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 241,
+   "execution_count": 23,
    "metadata": {},
    "outputs": [
     {
@@ -2051,7 +2051,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 242,
+   "execution_count": 24,
    "metadata": {},
    "outputs": [
     {
@@ -2075,6 +2075,13 @@
     "    size_idx=\"contrib\",\n",
     ")"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {