fix a but with multibam sample parsing from yaml files

ablab · Jan 5, 2024 · 7de3d5a · 7de3d5a
1 parent a5dc5c6
commit 7de3d5a
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/input_data_storage.py b/src/input_data_storage.py
@@ -251,7 +251,8 @@ def get_samples_from_yaml(self, yaml_file_path):
                         exit(-2)
                     readable_names_dict[current_sample_name][fname] = readable_name
             if len(current_sample) > 0:
-                sample_files.append([current_sample])
+                current_sample_list = [[s] for s in current_sample]
+                sample_files.append(current_sample_list)
                 experiment_names.append(current_sample_name)
                 if 'illumina bam' in sample.keys():
                     illumina_bam.append([normalize_path(yaml_file_path, ib) for ib in sample['illumina bam']])