Update V 1.0.5

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: biclique
 Title: Maximal Biclique Enumeration in Bipartite Graphs
-Version: 1.0.4
+Version: 1.0.5
 Authors@R: c(
     person("Yuping", "Lu", , "[email protected]", role = c("aut", "cre", "cph")),
     person("Charles", "Phillips", role = "aut"),
@@ -9,7 +9,7 @@ Authors@R: c(
     )
 Encoding: UTF-8
 Description: A tool for enumerating maximal complete bipartite graphs. The input should be a edge list file or a binary matrix file. 
-             The output are maximal complete bipartite graphs. Algorithms used can be found in this paper Y Zhang et al. BMC Bioinformatics 2014 15:110 <doi:10.1186/1471-2105-15-110>.
+             The output are maximal complete bipartite graphs. Algorithms used can be found in this paper Y. Lu et al. BMC Res Notes 13, 88 (2020) <doi:10.1186/s13104-020-04955-0>.
 URL: https://github.com/YupingLu/biclique
 BugReports: https://github.com/YupingLu/biclique/issues
 Depends:
@@ -19,4 +19,4 @@ Imports:
     utils
 License: GPL-2 | file LICENSE
 LazyData: true
-RoxygenNote: 6.1.1
+RoxygenNote: 7.0.2

NEWS.md

@@ -1,3 +1,7 @@
+biclique 1.0.5
+--------------
+* Update the reference paper.
+
 biclique 1.0.4
 --------------
 * Rename argument names for bi.clique.

R/package-biclique.R

@@ -7,7 +7,7 @@
 #' @docType package
 #' @title Maximal Biclique Enumeration in Bipartite Graphs
 #'
-#' @description A tool for enumerating maximal complete bipartite graphs. The input should be a edge list file or a binary matrix file. The output are maximal complete bipartite graphs. Algorithms used can be found in this paper Y Zhang et al. BMC Bioinformatics 2014 15:110 <doi: 10.1186/1471-2105-15-110>.
+#' @description A tool for enumerating maximal complete bipartite graphs. The input should be a edge list file or a binary matrix file. The output are maximal complete bipartite graphs. Algorithms used can be found in this paper Y. Lu et al. BMC Res Notes 13, 88 (2020) <doi:10.1186/s13104-020-04955-0>.
 #'
 #' @author Yuping Lu, Charles Phillips, Michael Langston
 #' @keywords biclique

README.md

@@ -59,11 +59,9 @@ Ask Questions
 
 License
 -------
-© Contributors, 2019. Licensed under an [GPL-2.0](https://github.com/YupingLu/biclique/blob/master/LICENSE) license.
+© Contributors, 2020. Licensed under an [GPL-2.0](https://github.com/YupingLu/biclique/blob/master/LICENSE) license.
 
 Reference Paper
 ---------------
-
-Zhang Y, Phillips CA, Rogers GL, Baker EJ, Chesler EJ, Langston MA. On finding bicliques in bipartite
-graphs: a novel algorithm and its application to the integration of diverse biological data types. BMC bioinformatics.
-2014; 15(1):110. doi: 10.1186/1471-2105-15-110 PMID: 24731198
+Lu, Y., Phillips, C.A. & Langston, M.A. Biclique: an R package for maximal biclique enumeration in bipartite graphs. 
+BMC Res Notes 13, 88 (2020). https://doi.org/10.1186/s13104-020-04955-0

cran-comments.md

@@ -1,10 +1,8 @@
-This is a small patch release.
-* Rename argument names for bi.clique.
-* Format bi.clique output.
-* Add a new example input file.
+This is a small update release.
+* Update the reference paper.
 
 ## Test environments
-* OS X, R 3.4.2
+* OS X, R 3.6.1
 * travis-ci: R 3.4, R-release
 * win-builder: R-devel, R-release, R-oldrelease