Annotated Variant Export #380
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Bumps the following core dependencies: - Python: 3.9 -> 3.11 - Pydantic 1.10.18 -> 2.10.4 - FastAPI: 0.95.2 -> 0.115.6 - Starlette: 0.27.0 -> 0.41.3 This list is not close to extensive, and other packages were updated as well for compatibility; Please see the `poetry.lock` diff.
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VA-Spec implementation for MaveDB mapped variant objects. VA-Spec depends on Pydantic 2.0+, which depends on Python 3.11+, so this change also bumps certain core dependencies to retain compatibility.
VA-Spec objects can be exported via a new dedicated endpoint. Objects are constructed according to VA-Spec documentation and core information model. For more information about the VA-Spec core information model, see their documentation.
An example VA-Spec object for a variant from https://mavedb.org/score-sets/urn:mavedb:00000097-a-1 is attached: va-spec_example_variant.json