changing paths to use SOURCE_DIR env variable

USCCACS · Jun 4, 2024 · c7410eb · c7410eb
1 parent 757d15c
commit c7410eb
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Showing 3 changed files with 8 additions and 8 deletions.
diff --git a/Examples/01_Optimization/01_Water/run.sh b/Examples/01_Optimization/01_Water/run.sh
@@ -1,7 +1,7 @@
 cp ../../../qxmd .
-cp /content/QXMD/util/qxREAD.py /content/QXMD/Examples/01_Optimization/01_Water/analysis/DOS/.
-cp /content/QXMD/util/qxREAD.py /content/QXMD/Examples/01_Optimization/01_Water/analysis/eng/.
-cp /content/QXMD/util/qxREAD.py /content/QXMD/Examples/01_Optimization/01_Water/analysis/pdb/.
+cp ${SOURCE_DIR}/util/qxREAD.py ${SOURCE_DIR}/Examples/01_Optimization/01_Water/analysis/DOS/.
+cp ${SOURCE_DIR}/util/qxREAD.py ${SOURCE_DIR}/Examples/01_Optimization/01_Water/analysis/eng/.
+cp ${SOURCE_DIR}/util/qxREAD.py ${SOURCE_DIR}/Examples/01_Optimization/01_Water/analysis/pdb/.
 export PYTHONPATH=../../../util/
 export LD_LIBRARY_PATH=../../../fftw-3.3.8/build/lib:${LD_LIBRARY_PATH}
 mkdir data

diff --git a/Examples/02_Adaibatic_MD/01_Water_NVE/run.sh b/Examples/02_Adaibatic_MD/01_Water_NVE/run.sh
@@ -1,6 +1,6 @@
 cp ../../../qxmd .
-cp /content/QXMD/util/qxREAD.py /content/QXMD/Examples/02_Adaibatic_MD/01_Water_NVE/analysis/bond-angle/.
-cp /content/QXMD/util/qxREAD.py /content/QXMD/Examples/02_Adaibatic_MD/01_Water_NVE/analysis/eng/.
+cp ${SOURCE_DIR}/util/qxREAD.py ${SOURCE_DIR}/Examples/02_Adaibatic_MD/01_Water_NVE/analysis/bond-angle/.
+cp ${SOURCE_DIR}/util/qxREAD.py ${SOURCE_DIR}/Examples/02_Adaibatic_MD/01_Water_NVE/analysis/eng/.
 mkdir data
 export PYTHONPATH=../../../util/
 export LD_LIBRARY_PATH=../../../fftw-3.3.8/build/lib:${LD_LIBRARY_PATH}

diff --git a/Examples/03_NAQMD/01_Water_NVE/run.sh b/Examples/03_NAQMD/01_Water_NVE/run.sh
@@ -1,7 +1,7 @@
 cp ../../../qxmd .
-cp /content/QXMD/util/qxREAD.py /content/QXMD/Examples/03_NAQMD/01_Water_NVE/analysis/bond-angle/.
-cp /content/QXMD/util/qxREAD.py /content/QXMD/Examples/03_NAQMD/01_Water_NVE/analysis/eig/.
-cp /content/QXMD/util/qxREAD.py /content/QXMD/Examples/03_NAQMD/01_Water_NVE/analysis/rate/.
+cp ${SOURCE_DIR}/util/qxREAD.py ${SOURCE_DIR}/Examples/03_NAQMD/01_Water_NVE/analysis/bond-angle/.
+cp ${SOURCE_DIR}/util/qxREAD.py ${SOURCE_DIR}/Examples/03_NAQMD/01_Water_NVE/analysis/eig/.
+cp ${SOURCE_DIR}/util/qxREAD.py ${SOURCE_DIR}/Examples/03_NAQMD/01_Water_NVE/analysis/rate/.
 mkdir data
 export PYTHONPATH=../../../util/
 export LD_LIBRARY_PATH=../../../fftw-3.3.8/build/lib:${LD_LIBRARY_PATH}