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Fix links
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richelbilderbeek committed Jan 16, 2025
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2 changes: 1 addition & 1 deletion docs/evaluations/20240419/README.md
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Expand Up @@ -14,7 +14,7 @@ tags:
This is an anonymous evaluation
and will ideally be published in raw form at
https://uppmax.github.io/bianca_workshops/evaluations/20240419/ .
https://github.com/UPPMAX/bianca_workshops/tree/main/docs/evaluations/20240419 .
To do so, please do not share sensitive data here!
Below are tallies, i.e. add one character behind each
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2 changes: 1 addition & 1 deletion docs/intermediate/compute_nodes.md
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Expand Up @@ -386,7 +386,7 @@ Examine the jobs run by user `douglas`. The relevant job numbers are the jobs wi

???+ question "Submit a Slurm job"

- Make a batch job to run the [demo](https://uppmax.github.io/bianca_workshops/modules/#bigger-exercises) "Hands on: Processing a BAM file to a VCF using GATK, and annotating the variants with snpEff". Ask for 2 cores for 1h.
- Make a batch job to run the [demo](https://uppmax.github.io/bianca_workshops/extra/slurm/) "Hands on: Processing a BAM file to a VCF using GATK, and annotating the variants with snpEff". Ask for 2 cores for 1h.
- You can copy the my_bio_workflow.sh file in ``/proj/sens2023598/workshop/slurm`` to your home folder and make the necessary changes.

??? tip "Answer"
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5 changes: 4 additions & 1 deletion mlc_config.json
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@@ -1,6 +1,6 @@
{
"aliveStatusCodes": [40, 200, 401, 403, 418, 500, 503],
"exclude": ["docs/sep23","docs/apr24"],
"exclude": ["docs/shared_documents","docs/lesson_plans"],
"ignorePatterns": [
{
"pattern": "^https://github.com/UPPMAX/bianca_workshop/blob/main/docs/presentations/NAISS%20SENS%2C%20sensitive%20data%2C%20and%20Bianca.pdf"
Expand All @@ -11,6 +11,9 @@
{
"pattern": "^https://snd.gu.se/sv/hantera-data/planera/forskningsdata-med-personuppgifter"
},
{
"pattern": "^https://supr.naiss.se/"
},
{
"pattern": "^https://supr.naiss.se/support/"
},
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