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@erinyoung erinyoung released this 21 Sep 15:47
· 433 commits to main since this release
v3.4.20230919
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Learn about vigilant mode.

Moderate update - but may come as a great relief to some:

  • current-datasets is now set to false by default - this should resolve a lot of issues with connectivity
  • changed datasets download to only download new genomes (does not download genomes from list)
    • This retires params.genome_references
  • updated fastani to 1.34
  • since fastani now allows *.gz as input, the included genomes are now separate compressed files
    • the 'decompression' process was removed
  • changed params.fastani_ref to accept a comma-delimited list of fasta files (or fasta.gz files) to be added to the fastani references
  • added params.fastani_ref_list to accept a file with a on each line for fasta files (or fasta.gz files) to be added to the fastani references
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