testing flye and raven

.github/workflows/test_assembler_flye_raven.yml

@@ -0,0 +1,30 @@
+name: Test Donut Falls flye assembly
+
+on: [pull_request, workflow_dispatch]
+
+jobs:
+
+  test:
+    runs-on: ubuntu-20.04
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Install Nextflow
+        run: |
+          wget -qO- get.nextflow.io | bash
+          sudo mv nextflow /usr/local/bin/
+          
+      - name: Run Donut Falls
+        run: |
+          docker --version
+          
+          nextflow run . -profile docker,test -c .github/workflows/github_actions.config --assembler raven,flye
+
+          tree donut_falls
+
+      - name: Check files
+        run: |
+          ls  donut_falls/multiqc/multiqc_report.html
+          ls  donut_falls/summary/flye_summary.tsv
+          cat donut_falls/summary/donut_falls_summary.json