added time increase for task.attempt

UPHL-BioNGS · May 9, 2024 · 205f253 · 205f253
1 parent e954823
commit 205f253
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -4,7 +4,7 @@ manifest {
   author                        = 'Erin Young'
   homePage                      = 'https://github.com/UPHL-BioNGS/Donut_Falls'
   description                   = "De novo assembly of long-reads"
-  version                       = '1.5.20240505'
+  version                       = '1.6.20240510'
   nextflowVersion               = '!>=22.10.1'
   defaultBranch                 = 'main'
 }
@@ -39,17 +39,17 @@ dag.enabled      = true
 process {
     maxRetries = 1
     maxErrors  = '-1'
-    //errorStrategy = { task.attempt < 2 ? 'retry' : 'ignore'}
+    errorStrategy = { task.attempt < 2 ? 'retry' : 'ignore'}
 
     withLabel:process_single {
       cpus   = { 1 }
       memory = { 6.GB }
-      time   = { 30.m }
+      time   = { 30.m * task.attempt}
     }
     withLabel:process_low {
         cpus   = { 2     }
         memory = { 12.GB }
-        time   = { 2.h   }
+        time   = { 2.h  * task.attempt }
     }
     withLabel:process_medium {
         cpus   = { 6     }