39 make examples up to date (#46)

* Add jupyter to poetry * Update examples
UMEssen · Jun 13, 2022 · 019346f · 019346f
1 parent b9800cc
commit 019346f
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diff --git a/examples/1-simple-json-to-df.ipynb b/examples/1-simple-json-to-df.ipynb
@@ -82,14 +82,15 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "http://hapi.fhir.org/baseDstu2/Observation?_count=1&_id=86092\n"
+      "http://hapi.fhir.org/baseDstu2/Observation?_id=86092\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "Query: 1it [00:00, 23831.27it/s]\n"
+      "Query: 100%|██████████| 1/1 [00:00<00:00, 25731.93it/s]\n",
+      "Build DF: 100%|██████████| 1/1 [00:00<00:00, 12520.31it/s]\n"
      ]
     },
     {
@@ -107,7 +108,6 @@
     "    bundles_function=search.steal_bundles,  # Non-parallel function that iterates through the bundles and returns them\n",
     "    resource_type=\"Observation\",\n",
     "    request_params={\n",
-    "        \"_count\": 1,\n",
     "        \"_id\": \"86092\",\n",
     "    },\n",
     ")\n",
@@ -152,7 +152,8 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "Query: 1it [00:00, 19239.93it/s]\n"
+      "Query: 100%|██████████| 1/1 [00:00<00:00, 15887.52it/s]\n",
+      "Build DF: 100%|██████████| 1/1 [00:00<00:00, 1508.74it/s]\n"
      ]
     },
     {
@@ -166,7 +167,7 @@
     }
    ],
    "source": [
-    "observation_tnm = search.query_to_dataframe(\n",
+    "observation_values = search.query_to_dataframe(\n",
     "    bundles_function=search.steal_bundles,\n",
     "    resource_type=\"Observation\",\n",
     "    request_params={\n",
@@ -181,7 +182,7 @@
     "        (\"patient\", \"subject.reference.replace('Patient/', ''\"),\n",
     "    ],\n",
     ")\n",
-    "observation_tnm"
+    "observation_values"
    ],
    "metadata": {
     "collapsed": false,

diff --git a/examples/2-condition-to-imaging-study.ipynb b/examples/2-condition-to-imaging-study.ipynb