merged new changes

Makefile

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+# Reference: 
+# 	https://swcarpentry.github.io/make-novice/02-makefiles.html
+# 	https://ubc-dsci.github.io/reproducible-and-trustworthy-workflows-for-data-science/materials/lectures/09-pipelines.html
+
+# The .PHONY rule is used to tell make that 'all', 'clean' are not files.
+.PHONY : all
+# The 'all' target is the default target. It depends on 'report/docs/index.html', which triggers the build process for this file.
+all : report/docs/index.html 
+
+# Unzip batch_run.zip
+data/batch_run/batch_run_3.5-turbo \
+	data/batch_run/batch_run_4-turbo \
+	data/batch_run/batch_run_4o : 
+	unzip data/batch_run/batch_run.zip -d data/batch_run/
+
+# Preprocess 
+data/processed/ground_truth.csv : analysis/preprocess_batch_run_result.py data/batch_run/batch_run_3.5-turbo
+	python analysis/preprocess_batch_run_result.py
+
+# Build 'report/docs/index.html' by rendering the Jupyter notebooks using Quarto.
+report/docs/index.html : data/processed/ground_truth.csv
+	quarto render
+
+.PHONY : publish
+publish : data/processed/ground_truth.csv
+	quarto publish gh-pages
+
+# The 'clean' target is used to clean up generated files and directories.
+.PHONY : clean
+clean : 
+	rm -rf report/docs/*
+	touch report/docs/.gitkeep
+	rm -rf data/batch_run/batch_run_3.5-turbo
+	rm -rf data/batch_run/batch_run_4-turbo
+	rm -rf data/batch_run/batch_run_4o
+	rm -rf data/processed/ground_truth.csv
+	rm -rf data/processed/score_*csv
+