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| [0;33m# MDS setup check 2023.1[0m | ||
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| [0;33m## Operating system[0m | ||
| ProductName: macOS | ||
| ProductVersion: 13.4 | ||
| BuildVersion: 22F66 | ||
|
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| [0;33m## System programs[0m | ||
| OK psql (PostgreSQL) 15.4 | ||
| MISSING rstudio 2023.06.* | ||
| OK R 4.3.2 (2023-10-31) -- "Eye Holes" | ||
| OK python 3.11.6 | ||
| OK conda 23 | ||
| OK bash 3.2.57(1)-release (arm64-apple-darwin22) | ||
| OK git 2.39.2 (Apple Git-143) | ||
| OK make 3.81 | ||
| OK latex 3.141592653-2.6-1.40.25 (TeX Live 2023) | ||
| OK tlmgr 5:21 +0200) | ||
| OK docker 24.0.6, build ed223bc | ||
| OK code 1.85.0 | ||
|
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||
| [0;33m## Python packages[0m | ||
| OK otter-grader=5.2.2 | ||
| OK pandas=2.1.1 | ||
| OK nbconvert-core=7.8.0 | ||
| OK playwright=1.40.0 | ||
| OK jupyterlab=4.0.6 | ||
| OK jupyterlab-git=0.41.0 | ||
| OK jupyterlab-spellchecker=0.8.4 | ||
| OK jupyterlab PDF-generation was successful. | ||
| OK jupyterlab WebPDF-generation was successful. | ||
| OK jupyterlab HTML-generation was successful. | ||
|
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||
| [0;33m## R packages[0m | ||
| OK tidyverse=2.0.0 | ||
| OK markdown=1.7 | ||
| OK rmarkdown=2.24 | ||
| OK renv=1.0.2 | ||
| OK IRkernel=1.3.2 | ||
| OK tinytex=0.46 | ||
| OK janitor=2.2.0 | ||
| OK gapminder=1.0.0 | ||
| OK readxl=1.4.3 | ||
| OK ottr=1.1.3 | ||
| OK canlang=0.0.1 | ||
| OK rmarkdown PDF-generation was successful. | ||
| OK rmarkdown HTML-generation was successful. | ||
|
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||
| [0;33m## Environmental variables[0m | ||
| GIT_PS1_SHOWDIRTYSTATE=1 | ||
| TERM_PROGRAM=Apple_Terminal | ||
| TERM=xterm-256color | ||
| SHELL=/bin/bash | ||
| CLICOLOR=1 | ||
| TMPDIR=/var/folders/yx/296325p15r92zgg4zc7px5qh0000gp/T/ | ||
| CONDA_SHLVL=1 | ||
| TERM_PROGRAM_VERSION=447 | ||
| CONDA_PROMPT_MODIFIER=(base) | ||
| TERM_SESSION_ID=AEF44705-253D-4AE4-A5F6-ED5FC1859015 | ||
| GITHUB_COM_PAT=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 | ||
| USER=timberst | ||
| CONDA_EXE=/Users/timberst/miniconda3/bin/conda | ||
| SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.92mmfw0xBh/Listeners | ||
| GITHUB_PAT=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 | ||
| BASH_SILENCE_DEPRECATION_WARNING=1 | ||
| _CE_CONDA= | ||
| LSCOLORS=ExGxFxdxCxDxDxxbaDecac | ||
| PATH=/Users/timberst/.cargo/bin:/Users/timberst/miniconda3/bin:/Users/timberst/miniconda3/condabin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Applications/quarto/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin | ||
| XML_CATALOG_FILES=file:///Users/timberst/miniconda3/etc/xml/catalog file:///etc/xml/catalog | ||
| __CFBundleIdentifier=com.apple.Terminal | ||
| CONDA_PREFIX=/Users/timberst/miniconda3 | ||
| PWD=/Users/timberst/Documents/dsci-310/dsci-310-student | ||
| LANG=en_CA.UTF-8 | ||
| XPC_FLAGS=0x0 | ||
| XPC_SERVICE_NAME=0 | ||
| _CE_M= | ||
| HOME=/Users/timberst | ||
| SHLVL=2 | ||
| LOGNAME=timberst | ||
| CONDA_PYTHON_EXE=/Users/timberst/miniconda3/bin/python | ||
| CONDA_DEFAULT_ENV=base | ||
| DISPLAY=/private/tmp/com.apple.launchd.l13hPiudL2/org.xquartz:0 | ||
| CANVAS_PAT=11224~Emah7Zet5Y4iuDzUL4tA8jfbFjQHyM1LPgNBsAHElKeBf92MRecO5qWanEqtv5uF | ||
| _=/usr/bin/env | ||
|
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||
| [0;33m## Content of .bash_profile[0m | ||
| # Set the default editor for programs launch from terminal | ||
| EDITOR="code --wait" | ||
| VISUAL=$EDITOR # Use the same value as for "EDITOR" in the line above | ||
| git config --global core.editor "code --wait" | ||
|
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| # >>> conda initialize >>> | ||
| # !! Contents within this block are managed by 'conda init' !! | ||
| __conda_setup="$('/Users/timberst/miniconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)" | ||
| if [ $? -eq 0 ]; then | ||
| eval "$__conda_setup" | ||
| else | ||
| if [ -f "/Users/timberst/miniconda3/etc/profile.d/conda.sh" ]; then | ||
| . "/Users/timberst/miniconda3/etc/profile.d/conda.sh" | ||
| else | ||
| export PATH="/Users/timberst/miniconda3/bin:$PATH" | ||
| fi | ||
| fi | ||
| unset __conda_setup | ||
| # <<< conda initialize <<< | ||
|
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||
| # Silence default shell note when launching bash | ||
| export BASH_SILENCE_DEPRECATION_WARNING=1 | ||
|
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||
| # Load the git prompt script | ||
| source ~/.git-prompt.sh | ||
| # Show unstaged (*) and staged (+) changes in the prompt string | ||
| export GIT_PS1_SHOWDIRTYSTATE=1 | ||
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||
| # Color text so it is easier to distinguish elements from each other | ||
| export CLICOLOR=1 | ||
| export LSCOLORS=ExGxFxdxCxDxDxxbaDecac | ||
| # Color the prompt string and add git info | ||
| export PS1=${CONDA_PROMPT_MODIFIER}'\[\033[01;32m\]\u@\h\[\033[01;35m\] \w\[\033[34m\]$(__git_ps1 " (%s)")\[\033[00m\]\n\$ ' | ||
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| # TAB completion configuration | ||
| # TAB completion ignores case | ||
| bind "set completion-ignore-case on" | ||
| # Require only one instead of two TAB presses before showing matches | ||
| bind "set show-all-if-ambiguous on" | ||
| # Unfortunately the tab cycling does not work together with single tab match expansion on macOS | ||
| # since bash is too old, so I have commented out the option below, | ||
| # but feel free to remove the leading `#` if you want to test it out. | ||
| # If there are multiple matches for completion, cycle through them with TAB | ||
| # bind 'TAB':menu-complete | ||
|
|
||
| # History configuration | ||
| # Cycle through history based on characters already typed on the line | ||
| bind '"\e[A":history-search-backward' | ||
| bind '"\e[B":history-search-forward' | ||
| # Append to the history file, don't overwrite it. | ||
| shopt -s histappend | ||
| # Write commands to history one-by-one right after they are executed | ||
| # instead of all together when the terminal is closed. | ||
| # Make new terminals see all commands run in currently open terminals and | ||
| # prepend a newline to the prompt string to separate it from the last command's output | ||
| PROMPT_COMMAND='history -a; echo' | ||
| # Increase history size | ||
| HISTSIZE=50000 | ||
| HISTFILESIZE=50000 | ||
|
|
||
| # Aliases and functions | ||
| # Note that aliases only are in effect when you are using the shell interactively | ||
| # (e.g. opening the terminal and typing or pasting commands). | ||
| # If you run a bash script or makefile, | ||
| # the original command is used instead of your alias. | ||
| # --- | ||
| # MDS help script | ||
| alias mds-help='bash ~/.mds-help.sh' | ||
| # Some common operations | ||
| alias l='ls -lthAF' | ||
| alias jl='jupyter lab' | ||
| alias ca='conda activate' | ||
| alias gl='git log --date short -10 --pretty=format:"%C(auto,yellow)%h %C(auto,blue)%ad%C(auto)%d %C(auto,reset)%s"' | ||
| alias gt='git status' | ||
| alias gm='git commit -m' | ||
| alias gap='git add -p' | ||
| # Move, remove, and copy show what was done and prompt before overwriting files. | ||
| alias rm="rm -vi" | ||
| alias mv="mv -vi" | ||
| alias cp="cp -vi" | ||
| alias mkdir="mkdir -vp" | ||
| # Case insensitive grep by default | ||
| alias grep='grep -i' | ||
| . "$HOME/.cargo/env" | ||
|
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||
| #Github enterprise token | ||
| export GITHUB_PAT='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' | ||
|
|
||
| # Canvas enterprise token | ||
| export CANVAS_PAT='11224~Emah7Zet5Y4iuDzUL4tA8jfbFjQHyM1LPgNBsAHElKeBf92MRecO5qWanEqtv5uF' | ||
|
|
||
| #Github.com org token | ||
| export GITHUB_COM_PAT='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' | ||
| [0;33m## Content of .bashrc[0m | ||
| # Do NOT add anything to this file, use `~/.bash_profile` instead. | ||
| # The next line automatically loads your `~/.bash_profile` | ||
| # any time a program tries to read your `~/.bashrc` file. | ||
| if [ -f ~/.bash_profile ]; then . ~/.bash_profile; fi | ||
| . "$HOME/.cargo/env" | ||
| OK rstudio |
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