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24 changes: 24 additions & 0 deletions .github/workflows/call-deploy-book.yml
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name: call-deploy-book

on:
push:
branches:
- '**'
# If your git repository has the Jupyter Book within some-subfolder next to
# unrelated files, you can make this run only if a file within that specific
# folder (or the workflow file itself) has been modified.
#
paths:
- book/**
- .github/workflows/call-deploy-book.yml
workflow_dispatch:

jobs:
call-workflow:
uses: TeachBooks/deploy-book-workflow/.github/workflows/deploy-book.yml@main
secrets: inherit
permissions:
contents: read
pages: write
id-token: write

137 changes: 137 additions & 0 deletions .gitignore
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# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST
.vscode/

# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
# However, in case of collaboration, if having platform-specific dependencies or dependencies
# having no cross-platform support, pipenv may install dependencies that don't work, or not
# install all needed dependencies.
#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# Jupyter Book
_build/
.teachbooks/

# poetry files
pyproject.toml
3 changes: 3 additions & 0 deletions LICENSE.md
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This book is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a>.

<a rel="license" href="http://creativecommons.org/licenses/by/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by/4.0/88x31.png"/></a>
52 changes: 52 additions & 0 deletions README.md
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# Your first TeachBook using the GitHub template


The template allows you to start your own Jupyter Book and hosting that book online without knowledge on Git, the Jupyter book package, python or anaconda. It doesn't elaborate on the collaborative functionalities of Git or how to edit the book.

## Features
- A github repository structure for making a [Jupyter Book](https://github.com/executablebooks/jupyter-book) (`/book`)
- An empty book containing an intro page on root, an example markdown page, an example jupyter notebook page, an example references page. and an example credits page. (`/book/_toc.yml`, `/book/_config.yml`, `/book/credits.md`, `/book/intro.md`, `/book/references.md`, `/book/some_content/overview.md`, `/book/some_content/text_and_code.ipynb`)
- A file ready for adding references (`references.bib`, `/book/references.md`)
- An example favicon (web browser icon) (`/book/figures/favicon.ico`, `book/_config.yml`.)
- An example book logo (`/book/figures/TUDelft_logo_rgb.png`, `/book/config.yml`)
- The configuration files set ready to make your Jupyter Notebooks pages work with [live code using our sphinx-thebe extension](https://teachbooks.tudelft.nl/jupyter-book-manual/features/live_code.html) and our recommended settings (`/book/config.yml`)
- An example of setting up preprocessing your table of contents to hide certain draft chapters for eg. students (`_toc.yml`)
- A file containing all the recommended software packages (`requirements.txt`)
- A file containing the recommended license CC BY 4.0 (`LICENSE.md`)
- Our [GitHub workflow for publishing your book to GitHub Pages](https://github.com/TeachBooks/deploy-book-workflow) (`.github/workflow/call-deploy-book.yml`)
- A gitignore file containing standard python filetype to ignore (`.gitignore`)
- A readme containing information how to use the template, which can adjusted after using the template (`README.md`)

## How to get started

How to use the template is demonstrated in the figure below, followed by a step-by-step tutorial.

![template-demo](figures/teachbooks-template.gif)
The demonstration is also available as a video [here](https://youtu.be/nN3Oi_MVvF0).

1. To get started making your Jupyter Book with our functionalities, use the [template book](https://github.com/TeachBooks/template) as template:

![use-template](figures/use_template.png)

2. Fill in a repository name, this name will be used in the future url of your book:

![create_new_repository](figures/create_new_repository.png)

3. You need to activate GitHub pages so that your website is published to the internet. As long as you don't do this your book is not published online. Actually, now that you've taken this template our workflow tries to publish it to GitHub pages, which you didn't have the chance to activate yet. That's why you probably received an email with 'call-deploy-book: Some jobs were not successful' and you see the failed job under <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-play UnderlineNav-octicon d-none d-sm-inline"> <path d="M8 0a8 8 0 1 1 0 16A8 8 0 0 1 8 0ZM1.5 8a6.5 6.5 0 1 0 13 0 6.5 6.5 0 0 0-13 0Zm4.879-2.773 4.264 2.559a.25.25 0 0 1 0 .428l-4.264 2.559A.25.25 0 0 1 6 10.559V5.442a.25.25 0 0 1 .379-.215Z"></path></svg>`Actions` - `All workflows` - `call-deploy-book` - <svg width="16" height="16" style="margin-top: 2px" class="octicon octicon-x-circle-fill color-fg-danger" aria-label="failed: " viewBox="0 0 16 16" version="1.1" role="img"><path d="M2.343 13.657A8 8 0 1 1 13.658 2.343 8 8 0 0 1 2.343 13.657ZM6.03 4.97a.751.751 0 0 0-1.042.018.751.751 0 0 0-.018 1.042L6.94 8 4.97 9.97a.749.749 0 0 0 .326 1.275.749.749 0 0 0 .734-.215L8 9.06l1.97 1.97a.749.749 0 0 0 1.275-.326.749.749 0 0 0-.215-.734L9.06 8l1.97-1.97a.749.749 0 0 0-.326-1.275.749.749 0 0 0-.734.215L8 6.94Z"></path></svg>`Initial commit`. You can activate GitHub pages by setting the source for GitHub pages to GitHub Actions under <svg aria-label="Edit repository metadata" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-gear float-right"> <path d="M8 0a8.2 8.2 0 0 1 .701.031C9.444.095 9.99.645 10.16 1.29l.288 1.107c.018.066.079.158.212.224.231.114.454.243.668.386.123.082.233.09.299.071l1.103-.303c.644-.176 1.392.021 1.82.63.27.385.506.792.704 1.218.315.675.111 1.422-.364 1.891l-.814.806c-.049.048-.098.147-.088.294.016.257.016.515 0 .772-.01.147.038.246.088.294l.814.806c.475.469.679 1.216.364 1.891a7.977 7.977 0 0 1-.704 1.217c-.428.61-1.176.807-1.82.63l-1.102-.302c-.067-.019-.177-.011-.3.071a5.909 5.909 0 0 1-.668.386c-.133.066-.194.158-.211.224l-.29 1.106c-.168.646-.715 1.196-1.458 1.26a8.006 8.006 0 0 1-1.402 0c-.743-.064-1.289-.614-1.458-1.26l-.289-1.106c-.018-.066-.079-.158-.212-.224a5.738 5.738 0 0 1-.668-.386c-.123-.082-.233-.09-.299-.071l-1.103.303c-.644.176-1.392-.021-1.82-.63a8.12 8.12 0 0 1-.704-1.218c-.315-.675-.111-1.422.363-1.891l.815-.806c.05-.048.098-.147.088-.294a6.214 6.214 0 0 1 0-.772c.01-.147-.038-.246-.088-.294l-.815-.806C.635 6.045.431 5.298.746 4.623a7.92 7.92 0 0 1 .704-1.217c.428-.61 1.176-.807 1.82-.63l1.102.302c.067.019.177.011.3-.071.214-.143.437-.272.668-.386.133-.066.194-.158.211-.224l.29-1.106C6.009.645 6.556.095 7.299.03 7.53.01 7.764 0 8 0Zm-.571 1.525c-.036.003-.108.036-.137.146l-.289 1.105c-.147.561-.549.967-.998 1.189-.173.086-.34.183-.5.29-.417.278-.97.423-1.529.27l-1.103-.303c-.109-.03-.175.016-.195.045-.22.312-.412.644-.573.99-.014.031-.021.11.059.19l.815.806c.411.406.562.957.53 1.456a4.709 4.709 0 0 0 0 .582c.032.499-.119 1.05-.53 1.456l-.815.806c-.081.08-.073.159-.059.19.162.346.353.677.573.989.02.03.085.076.195.046l1.102-.303c.56-.153 1.113-.008 1.53.27.161.107.328.204.501.29.447.222.85.629.997 1.189l.289 1.105c.029.109.101.143.137.146a6.6 6.6 0 0 0 1.142 0c.036-.003.108-.036.137-.146l.289-1.105c.147-.561.549-.967.998-1.189.173-.086.34-.183.5-.29.417-.278.97-.423 1.529-.27l1.103.303c.109.029.175-.016.195-.045.22-.313.411-.644.573-.99.014-.031.021-.11-.059-.19l-.815-.806c-.411-.406-.562-.957-.53-1.456a4.709 4.709 0 0 0 0-.582c-.032-.499.119-1.05.53-1.456l.815-.806c.081-.08.073-.159.059-.19a6.464 6.464 0 0 0-.573-.989c-.02-.03-.085-.076-.195-.046l-1.102.303c-.56.153-1.113.008-1.53-.27a4.44 4.44 0 0 0-.501-.29c-.447-.222-.85-.629-.997-1.189l-.289-1.105c-.029-.11-.101-.143-.137-.146a6.6 6.6 0 0 0-1.142 0ZM11 8a3 3 0 1 1-6 0 3 3 0 0 1 6 0ZM9.5 8a1.5 1.5 0 1 0-3.001.001A1.5 1.5 0 0 0 9.5 8Z"></path> </svg>`Settings` - <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-browser">
<path d="M0 2.75C0 1.784.784 1 1.75 1h12.5c.966 0 1.75.784 1.75 1.75v10.5A1.75 1.75 0 0 1 14.25 15H1.75A1.75 1.75 0 0 1 0 13.25ZM14.5 6h-13v7.25c0 .138.112.25.25.25h12.5a.25.25 0 0 0 .25-.25Zm-6-3.5v2h6V2.75a.25.25 0 0 0-.25-.25ZM5 2.5v2h2v-2Zm-3.25 0a.25.25 0 0 0-.25.25V4.5h2v-2Z"></path>
</svg> `Pages` - `Build and deployment` - `Source` - `GitHub Actions`:

![Activate pages](figures/set_up_pages.png)

4. Make an edit to the book by editing and committing changes to one of the files in the `book/` subdirectory (available under <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-code UnderlineNav-octicon d-none d-sm-inline"> <path d="m11.28 3.22 4.25 4.25a.75.75 0 0 1 0 1.06l-4.25 4.25a.749.749 0 0 1-1.275-.326.749.749 0 0 1 .215-.734L13.94 8l-3.72-3.72a.749.749 0 0 1 .326-1.275.749.749 0 0 1 .734.215Zm-6.56 0a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042L2.06 8l3.72 3.72a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L.47 8.53a.75.75 0 0 1 0-1.06Z"></path></svg> `Code`). Now checkout the progress of the publishing workflow under <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-play UnderlineNav-octicon d-none d-sm-inline"> <path d="M8 0a8 8 0 1 1 0 16A8 8 0 0 1 8 0ZM1.5 8a6.5 6.5 0 1 0 13 0 6.5 6.5 0 0 0-13 0Zm4.879-2.773 4.264 2.559a.25.25 0 0 1 0 .428l-4.264 2.559A.25.25 0 0 1 6 10.559V5.442a.25.25 0 0 1 .379-.215Z"></path></svg>`Actions` - `All workflows` - `call-deploy-book` -`<the most recent workflow run>`. Remember, the first commit which is there has failed because GitHub Pages wasn't activated at the time of `Initial commit`, you could also re-run that job if you don't want to make an edit. You can do so by running the workflow from <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-play UnderlineNav-octicon d-none d-sm-inline"> <path d="M8 0a8 8 0 1 1 0 16A8 8 0 0 1 8 0ZM1.5 8a6.5 6.5 0 1 0 13 0 6.5 6.5 0 0 0-13 0Zm4.879-2.773 4.264 2.559a.25.25 0 0 1 0 .428l-4.264 2.559A.25.25 0 0 1 6 10.559V5.442a.25.25 0 0 1 .379-.215Z"></path></svg>`Actions` - `All workflows` - `call-deploy-book` - <svg width="16" height="16" style="margin-top: 2px" class="octicon octicon-x-circle-fill color-fg-danger" aria-label="failed: " viewBox="0 0 16 16" version="1.1" role="img"><path d="M2.343 13.657A8 8 0 1 1 13.658 2.343 8 8 0 0 1 2.343 13.657ZM6.03 4.97a.751.751 0 0 0-1.042.018.751.751 0 0 0-.018 1.042L6.94 8 4.97 9.97a.749.749 0 0 0 .326 1.275.749.749 0 0 0 .734-.215L8 9.06l1.97 1.97a.749.749 0 0 0 1.275-.326.749.749 0 0 0-.215-.734L9.06 8l1.97-1.97a.749.749 0 0 0-.326-1.275.749.749 0 0 0-.734.215L8 6.94Z"></path></svg>`Initial commit` - <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-sync color-fg-muted"> <path d="M1.705 8.005a.75.75 0 0 1 .834.656 5.5 5.5 0 0 0 9.592 2.97l-1.204-1.204a.25.25 0 0 1 .177-.427h3.646a.25.25 0 0 1 .25.25v3.646a.25.25 0 0 1-.427.177l-1.38-1.38A7.002 7.002 0 0 1 1.05 8.84a.75.75 0 0 1 .656-.834ZM8 2.5a5.487 5.487 0 0 0-4.131 1.869l1.204 1.204A.25.25 0 0 1 4.896 6H1.25A.25.25 0 0 1 1 5.75V2.104a.25.25 0 0 1 .427-.177l1.38 1.38A7.002 7.002 0 0 1 14.95 7.16a.75.75 0 0 1-1.49.178A5.5 5.5 0 0 0 8 2.5Z"></path></svg>`Re-run all jobs` - `Re-run jobs`:

![Action](figures/action_re-run.jpeg)

5. When the workflow has finished, visit your build book at `https://<username or organiszation_name>.github.io/<repository_name>` (case sensitive). For our example it is [https://dummydocent.github.io/test_book_from_template/](https://dummydocent.github.io/test_book_from_template/) for the shown repository. These links are visible in the action's summary as well, as shown in the figure of step 4.

Additional tip:
Set the repository website as your GitHub Pages website under <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-code UnderlineNav-octicon d-none d-sm-inline">
<path d="m11.28 3.22 4.25 4.25a.75.75 0 0 1 0 1.06l-4.25 4.25a.749.749 0 0 1-1.275-.326.749.749 0 0 1 .215-.734L13.94 8l-3.72-3.72a.749.749 0 0 1 .326-1.275.749.749 0 0 1 .734.215Zm-6.56 0a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042L2.06 8l3.72 3.72a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L.47 8.53a.75.75 0 0 1 0-1.06Z"></path>
</svg>`Code`- `About` - <svg aria-label="Edit repository metadata" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-gear float-right"> <path d="M8 0a8.2 8.2 0 0 1 .701.031C9.444.095 9.99.645 10.16 1.29l.288 1.107c.018.066.079.158.212.224.231.114.454.243.668.386.123.082.233.09.299.071l1.103-.303c.644-.176 1.392.021 1.82.63.27.385.506.792.704 1.218.315.675.111 1.422-.364 1.891l-.814.806c-.049.048-.098.147-.088.294.016.257.016.515 0 .772-.01.147.038.246.088.294l.814.806c.475.469.679 1.216.364 1.891a7.977 7.977 0 0 1-.704 1.217c-.428.61-1.176.807-1.82.63l-1.102-.302c-.067-.019-.177-.011-.3.071a5.909 5.909 0 0 1-.668.386c-.133.066-.194.158-.211.224l-.29 1.106c-.168.646-.715 1.196-1.458 1.26a8.006 8.006 0 0 1-1.402 0c-.743-.064-1.289-.614-1.458-1.26l-.289-1.106c-.018-.066-.079-.158-.212-.224a5.738 5.738 0 0 1-.668-.386c-.123-.082-.233-.09-.299-.071l-1.103.303c-.644.176-1.392-.021-1.82-.63a8.12 8.12 0 0 1-.704-1.218c-.315-.675-.111-1.422.363-1.891l.815-.806c.05-.048.098-.147.088-.294a6.214 6.214 0 0 1 0-.772c.01-.147-.038-.246-.088-.294l-.815-.806C.635 6.045.431 5.298.746 4.623a7.92 7.92 0 0 1 .704-1.217c.428-.61 1.176-.807 1.82-.63l1.102.302c.067.019.177.011.3-.071.214-.143.437-.272.668-.386.133-.066.194-.158.211-.224l.29-1.106C6.009.645 6.556.095 7.299.03 7.53.01 7.764 0 8 0Zm-.571 1.525c-.036.003-.108.036-.137.146l-.289 1.105c-.147.561-.549.967-.998 1.189-.173.086-.34.183-.5.29-.417.278-.97.423-1.529.27l-1.103-.303c-.109-.03-.175.016-.195.045-.22.312-.412.644-.573.99-.014.031-.021.11.059.19l.815.806c.411.406.562.957.53 1.456a4.709 4.709 0 0 0 0 .582c.032.499-.119 1.05-.53 1.456l-.815.806c-.081.08-.073.159-.059.19.162.346.353.677.573.989.02.03.085.076.195.046l1.102-.303c.56-.153 1.113-.008 1.53.27.161.107.328.204.501.29.447.222.85.629.997 1.189l.289 1.105c.029.109.101.143.137.146a6.6 6.6 0 0 0 1.142 0c.036-.003.108-.036.137-.146l.289-1.105c.147-.561.549-.967.998-1.189.173-.086.34-.183.5-.29.417-.278.97-.423 1.529-.27l1.103.303c.109.029.175-.016.195-.045.22-.313.411-.644.573-.99.014-.031.021-.11-.059-.19l-.815-.806c-.411-.406-.562-.957-.53-1.456a4.709 4.709 0 0 0 0-.582c-.032-.499.119-1.05.53-1.456l.815-.806c.081-.08.073-.159.059-.19a6.464 6.464 0 0 0-.573-.989c-.02-.03-.085-.076-.195-.046l-1.102.303c-.56.153-1.113.008-1.53-.27a4.44 4.44 0 0 0-.501-.29c-.447-.222-.85-.629-.997-1.189l-.289-1.105c-.029-.11-.101-.143-.137-.146a6.6 6.6 0 0 0-1.142 0ZM11 8a3 3 0 1 1-6 0 3 3 0 0 1 6 0ZM9.5 8a1.5 1.5 0 1 0-3.001.001A1.5 1.5 0 0 0 9.5 8Z"></path> </svg> - `Website` - `Use your GitHub Pages Website`

![github_pages_as_website](figures/use_github_pages_website.png)
34 changes: 34 additions & 0 deletions book/_config.yml
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title: Template
author: TeachBooks Team from Delft university of Technology, built with <a href="https://teachbooks.tudelft.nl/">TeachBooks</a> and <a href="https://jupyterbook.org/">Jupyter Book</a>, <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank" rel="license noopener noreferrer"">CC BY 4.0<img style="height:22px!important;margin-left:3px;vertical-align:text-bottom;" src="https://mirrors.creativecommons.org/presskit/icons/cc.svg" alt=""><img style="height:22px!important;margin-left:3px;vertical-align:text-bottom;" src="https://mirrors.creativecommons.org/presskit/icons/by.svg" alt=""> #Add your own name here
logo: figures/TUDelft_logo_rgb.png #add your own logo here

execute:
execute_notebooks: "off"

only_build_toc_files: true

html:
favicon : "figures/favicon.ico"
baseurl : "https://teachbooks.github.io/template/" #Replace this with your own URL
home_page_in_navbar : true

sphinx:
config:
html_js_files:
- https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js
thebe_config:
use_thebe_lite: true
exclude_patterns: ["**/_*.yml", "**/*.md", "**/*.ipynb"]
html_theme_options:
repository_url: "https://github.com/TeachBooks/template" #add your own repo URL here
use_repository_button: true
use_issues_button : true
launch_buttons:
thebe: true
html_show_copyright: false
extra_extensions:
- sphinx.ext.imgconverter
- jupyterbook_patches

bibtex_bibfiles:
- references.bib
13 changes: 13 additions & 0 deletions book/_toc.yml
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format: jb-book
root: intro.md

parts:
- caption: Contents
chapters:
- file: some_content/overview.md
# START REMOVE-FROM-PUBLISH
sections:
- file: some_content/text_and_code.ipynb
# END REMOVE-FROM-PUBLISH
- file: references.md
- file: credits.md
19 changes: 19 additions & 0 deletions book/credits.md
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@@ -0,0 +1,19 @@
(credits)=
# Credits

You can refer to this book as:

> `<Author>` `<Year>` `<Book Title>`, `<Year>`, <url>>.
You can refer to individual chapters or pages within this book as:

> `<Primary Author>` `<Year>` `<Title of Chapter or Page>`. In `<Author>` (Ed.), `<Book Title>`, `<Year>`, <url>
## Source files
The files are stored on a [public Git repository](<url>). The published version of this book is compiled from branch `<branch>`. View the repository README file or contact the author for additional information.

(editor)=
## About the Editor
`<Author>`

### Acknowledgements
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(intro)=
# Welcome to the Template Book

_Write book intro here. This is the first page the student will see when opening the url._

This book can be used as a template for other books. It includes all software developed by the CEG interactive books initiative and make it easier to keep various software in those other books up to date.

---

This book is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a>.

<a rel="license" href="http://creativecommons.org/licenses/by/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by/4.0/88x31.png"/></a>
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