Update ELNs_to_KG_modules.py

TUDoAD · Feb 3, 2024 · 64c2c39 · 64c2c39
1 parent 5aac39d
commit 64c2c39
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/ELNs_to_KG_modules.py b/ELNs_to_KG_modules.py
@@ -629,13 +629,15 @@ class {}(onto.search_one(iri = '*PhysChemProcessingModule')):
                         enz_id = eln_dict["substances"][prop_key]["hasEnzymeML_ID"]
                     except:
                         enz_id = ''
-
+
+                    combined_ind_uuid = "PFD_" + str(uuid.uuid4()).replace("-","_")
                     combined_ind_name = proc_mod + '_' + prop_key
 
                     # Add dataProperties of subdictionaries, mostly containing material streams of the substances
                     for key in list(PFD_dict[proc_mod][prop_key].keys()):
                         onto = datProp_from_str(key, onto)
 
+                    #TODO: Alex
                     # Add individual for each proc+substance and connect it to individuals                    
                     codestring = """with onto:
                         proc_indv = onto.search_one(iri = "*{}") 
@@ -648,7 +650,7 @@ class {}(onto.search_one(iri = '*PhysChemProcessingModule')):
                         proc_subst_indv.RO_0002473.append(subst_indv)                           
                         proc_subst_indv.BFO_0000050.append(proc_indv)
                         
-                        """.format(uuid_dict[proc_mod],prop_key,enz_id,combined_ind_name,combined_ind_name)
+                        """.format(uuid_dict[proc_mod],prop_key,enz_id,combined_ind_uuid,combined_ind_name)
 
                     # add data properties for newly created individual
                     for key in list(PFD_dict[proc_mod][prop_key].keys()):