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WIP: Fix bug in Knowledge Gap detection with duplicate triples #552

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Sophietje
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Fixes #519

@Sophietje Sophietje linked an issue Nov 1, 2024 that may be closed by this pull request
Sophietje and others added 28 commits November 4, 2024 10:24
Also group the configuration keys in a dedicated *Config class.
We no longer use environment variables directly, but we do that through
MicroProfile Config implementation. Values are automatically overridden
by users using environment variables or Java system properties. We can
determine whether a value was overridden by checking whether the
ConfigValue#getSourceOrdinal() of a configuration value is > 100.
At a later stage we also need to update the documentation in the ./docs/
folder.
…orithm

# Conflicts:
#	smart-connector/src/main/java/eu/knowledge/engine/smartconnector/impl/Util.java
They work correctly now.
Bumps `jetty-version` from 11.0.15 to 11.0.24.

Updates `org.eclipse.jetty:jetty-util` from 11.0.15 to 11.0.24

Updates `org.eclipse.jetty:jetty-servlet` from 11.0.15 to 11.0.24

Updates `org.eclipse.jetty:jetty-server` from 11.0.15 to 11.0.24

---
updated-dependencies:
- dependency-name: org.eclipse.jetty:jetty-util
  dependency-type: direct:production
  update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-servlet
  dependency-type: direct:production
  update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-server
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps org.apache.maven:maven-model from 3.9.4 to 3.9.9.

---
updated-dependencies:
- dependency-name: org.apache.maven:maven-model
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump ch.qos.logback:logback-core from 1.4.14 to 1.5.12

Bumps [ch.qos.logback:logback-core](https://github.com/qos-ch/logback) from 1.4.14 to 1.5.12.
- [Commits](qos-ch/logback@v_1.4.14...v_1.5.12)

---
updated-dependencies:
- dependency-name: ch.qos.logback:logback-core
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

* Remove logback dependency

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: lathouwerssam <[email protected]>
Bumps `jackson-version` from 2.18.1 to 2.18.2.

Updates `com.fasterxml.jackson.datatype:jackson-datatype-joda` from 2.18.1 to 2.18.2
- [Commits](FasterXML/jackson-datatype-joda@jackson-datatype-joda-2.18.1...jackson-datatype-joda-2.18.2)

Updates `com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider` from 2.18.1 to 2.18.2

Updates `com.fasterxml.jackson.core:jackson-core` from 2.18.1 to 2.18.2
- [Commits](FasterXML/jackson-core@jackson-core-2.18.1...jackson-core-2.18.2)

Updates `com.fasterxml.jackson.core:jackson-annotations` from 2.18.1 to 2.18.2
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `com.fasterxml.jackson.datatype:jackson-datatype-jsr310` from 2.18.1 to 2.18.2

Updates `com.fasterxml.jackson.core:jackson-databind` from 2.18.1 to 2.18.2
- [Commits](https://github.com/FasterXML/jackson/commits)

---
updated-dependencies:
- dependency-name: com.fasterxml.jackson.datatype:jackson-datatype-joda
  dependency-type: direct:production
  update-type: version-update:semver-patch
- dependency-name: com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider
  dependency-type: direct:production
  update-type: version-update:semver-patch
- dependency-name: com.fasterxml.jackson.core:jackson-core
  dependency-type: direct:production
  update-type: version-update:semver-patch
- dependency-name: com.fasterxml.jackson.core:jackson-annotations
  dependency-type: direct:production
  update-type: version-update:semver-patch
- dependency-name: com.fasterxml.jackson.datatype:jackson-datatype-jsr310
  dependency-type: direct:production
  update-type: version-update:semver-patch
- dependency-name: com.fasterxml.jackson.core:jackson-databind
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps `swagger-core-version` from 2.2.22 to 2.2.26.

Updates `io.swagger.core.v3:swagger-jaxrs2-jakarta` from 2.2.22 to 2.2.26

Updates `io.swagger.core.v3:swagger-jaxrs2-servlet-initializer-v2-jakarta` from 2.2.22 to 2.2.26

---
updated-dependencies:
- dependency-name: io.swagger.core.v3:swagger-jaxrs2-jakarta
  dependency-type: direct:production
  update-type: version-update:semver-patch
- dependency-name: io.swagger.core.v3:swagger-jaxrs2-servlet-initializer-v2-jakarta
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
bnouwt and others added 27 commits January 13, 2025 09:57
…o-make-meta-functionality-reusable

581 update admin UI implementation to make meta functionality reusable
* Add workflow for (1) drafting release, (2) uploading Docker images

* Allow manual trigger for docker image uploads and update path to JARs for draft release

* Update release steps in documentation

* Skip maven tests in CI for draft release and Docker image

* Explicitly mention in 'Release steps' that you need to make a new branch
Bumps [org.junit.jupiter:junit-jupiter-api](https://github.com/junit-team/junit5) from 5.11.3 to 5.11.4.
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](junit-team/junit5@r5.11.3...r5.11.4)

---
updated-dependencies:
- dependency-name: org.junit.jupiter:junit-jupiter-api
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps `swagger-core-version` from 2.2.26 to 2.2.27.

Updates `io.swagger.core.v3:swagger-jaxrs2-jakarta` from 2.2.26 to 2.2.27

Updates `io.swagger.core.v3:swagger-jaxrs2-servlet-initializer-v2-jakarta` from 2.2.26 to 2.2.27

---
updated-dependencies:
- dependency-name: io.swagger.core.v3:swagger-jaxrs2-jakarta
  dependency-type: direct:production
  update-type: version-update:semver-patch
- dependency-name: io.swagger.core.v3:swagger-jaxrs2-servlet-initializer-v2-jakarta
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…ection-algorithm' into 519-fix-bug-in-knowledge-gap-detection-algorithm

# Conflicts:
#	smart-connector/src/test/java/eu/knowledge/engine/smartconnector/api/TestKnowledgeGapDetection.java
@Sophietje
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Closing this PR as I messed up the git history. New PR available at #594

@Sophietje Sophietje closed this Jan 24, 2025
@Sophietje Sophietje deleted the 519-fix-bug-in-knowledge-gap-detection-algorithm branch January 31, 2025 10:33
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Fix bug in knowledge gap detection algorithm.
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