Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Chic stats #792

Open
wants to merge 2 commits into
base: main
Choose a base branch
from
+320 −1
Open

Chic stats #792

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
3c424aa
WIP CHIC Stats.
adamhstewart Feb 19, 2023
4aa30cd
Fix error.
adamhstewart May 3, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 10 additions & 0 deletions server/RoboFile.php
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -423,6 +423,16 @@ public function reportPregnancy($limit_date = NULL) {
$this->_exec("cd /var/www/html/server/www && drush scr profiles/hedley/modules/custom/hedley_admin/scripts/generate-closed-pregnancies-report.php --limit_date=$limit_date");
}

/**
* Generates the CHIC report.
*/
public function reportCHIC($start_date = NULL, $end_date = NULL) {
if (empty($start_date)) {
$start_date = date('Y-m-d');
$end_date = date('Y-m-d');
}
$this->_exec("cd /var/www/html/server/www && drush scr profiles/hedley/modules/custom/hedley_admin/scripts/generate-chic-report.php --start_date=$start_date --end_date=$end_date");
}
/**
* Generates the nutrition report.
*/
Expand Down
2 changes: 1 addition & 1 deletion server/hedley/modules/custom/hedley_admin/scripts/generate-anc-report.php
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -74,7 +74,7 @@

$queries = [
// As the group of all pregnancies.
"First Visits - Any location" => file_get_contents(__DIR__ . '/anc-first-visit-all-pregnancies.SQL'),
"First Visits - Any location" => file_get_contents(__DIR__ . '/anc-first-visit-all-pregnancies-monthly.SQL'),
];

foreach ($queries as $label => $query) {
Expand Down
261 changes: 261 additions & 0 deletions server/hedley/modules/custom/hedley_admin/scripts/generate-chic-report.php
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,261 @@
<?php

/**
* @file
* ANC recurring data report.
*
* This report shows the number of visits a woman has had in each pregnancy
* in three ways
* Pregnancy visit: ANC for humans, `prenatal` in Drupal.
*/

require_once __DIR__ . '/report_common.inc';

$start_date = drush_get_option('start_date', FALSE);
$end_date = drush_get_option('end_date', FALSE);
if (!$start_date || !$end_date) {
drush_print('Please specify date options');
exit;
}

drush_print("# CHIC report - " . $start_date . "-" . $end_date);



$queries = [
// As the group of all pregnancies.
"First Visits - Any location" => file_get_contents(__DIR__ . '/anc-first-visit-all-pregnancies-monthly.SQL'),
];

foreach ($queries as $label => $query) {
$data = [];
$results = db_query($query, [':start' => $start_date, ':end' => $end_date])->fetchAll(PDO::FETCH_ASSOC);
foreach ($results as $result) {
$total_first_visits = $result['first_trimester'] + $result['second_trimester'] + $result['third_trimester'];
$first_trimester_percentage = ($result['first_trimester'] != 0) ? $result['first_trimester'] / $total_first_visits : '0';
$second_trimester_percentage = ($result['second_trimester'] != 0) ? $result['second_trimester'] / $total_first_visits : '0';
$third_trimester_percentage = ($result['third_trimester'] != 0) ? $result['third_trimester'] / $total_first_visits : '0';

$data = [
[
'First Trimester',
$result['first_trimester'],
$first_trimester_percentage,
],
[
'Second Trimester',
$result['second_trimester'],
$second_trimester_percentage,
],
[
'Third Trimester',
$result['third_trimester'],
$third_trimester_percentage,
],
[
'Total',
$total_first_visits,
'-',
],
];
}

$text_table = new HedleyAdminTextTable(['Trimester', 'Count', 'Percentage']);
$text_table->addData($data);

drush_print('## ' . $label);
drush_print($text_table->render());
}

drush_print("# Closed pregnancies report - " . $start_date . " - " . $end_date);

$queries = [
"Outcome Location" => file_get_contents(__DIR__ . '/chic-outcome-location.SQL'),
];

foreach ($queries as $label => $query) {
$table = new HedleyAdminTextTable([$label, 'Counter']);
$results = db_query($query, [':start' => $start_date, ':end' => $end_date])->fetchAll(PDO::FETCH_ASSOC);
$data = [];
$total_count = 0;
foreach ($results as $result) {
$data[] = [
$result['type'],
$result['counter'],
];
$total_count = $total_count + $result['counter'];
}

$data[] = [
'Total Deliveries',
$total_count,
];

drush_print($table->render($data));
}

drush_print("# Newborn Followup report - " . $start_date . " - " . $end_date);

$queries = [
"Newborn Followup" => file_get_contents(__DIR__ . '/chic-newborn-visit.SQL'),
];

foreach ($queries as $label => $query) {
$table = new HedleyAdminTextTable([$label, 'Count']);
$results = db_query($query, [':start' => $start_date, ':end' => $end_date])->fetchAll(PDO::FETCH_ASSOC);
$data = [];
foreach ($results as $result) {
$data[] = [
'Newborn Visits within 2 days',
$result['counter'],
];

$data[] = [
'Total Newborn Visits',
$result['total'],
];
}

drush_print($table->render($data));

}

// Get the list of encounters.
$query = file_get_contents(__DIR__ . '/chic-ai-encounters.SQL');
$results = db_query($query, [':start' => $start_date, ':end' => $end_date])->fetchAll(PDO::FETCH_ASSOC);

$nids = [];
foreach ($results as $result) {
$nids[] = $result['nid'];
}


$symptoms_general[] = [
'field' => 'field_data_field_body_aches_period',
'value' => 'field_body_aches_period_value',
'name' => 'bd',
];
$symptoms_general[] =[
'field' => 'field_data_field_chills_period',
'value' => 'field_chills_period_value',
'name' => 'nbd',
];
$symptoms_general[] =[
'field' => 'field_data_field_fever_period',
'value' => 'field_fever_period_value',
'name' => 'fever',
];
$symptoms_general[] =[
'field' => 'field_data_field_night_sweats_period',
'value' => 'field_night_sweats_period_value',
'name' => 'ns',
];
$symptoms_general[] =[
'field' => 'field_data_field_headache_period',
'value' => 'field_headache_period_value',
'name' => 'headache',
];
$symptoms_general[] =[
'field' => 'field_data_field_lethargy_period',
'value' => 'field_lethargy_period_value',
'name' => 'lethargy',
];
$symptoms_general[] =[
'field' => 'field_data_field_poor_suck_period',
'value' => 'field_poor_suck_period_value',
'name' => 'poor_suck',
];
$symptoms_general[] =[
'field' => 'field_data_field_unable_to_eat_period',
'value' => 'field_unable_to_eat_period_value',
'name' => 'unable_to_eat',
];
$symptoms_general[] =[
'field' => 'field_data_field_unable_to_drink_period',
'value' => 'field_unable_to_drink_period_value',
'name' => 'unable_to_drink',
];

$symptoms_general[] =[
'field' => 'field_data_field_increased_thirst_period',
'value' => 'field_increased_thirst_period_value',
'name' => 'increased_thirst',
];
$symptoms_general[] =[
'field' => 'field_data_field_dry_mouth_period',
'value' => 'field_dry_mouth_period_value',
'name' => 'dry_mouth',
];
$symptoms_general[] =[
'field' => 'field_data_field_severe_weakness_period',
'value' => 'field_severe_weakness_period_value',
'name' => 'severe_weakness',
];
$total_count = 0;
$success_count = 0;

foreach ($nids as $nid) {

$query = "SELECT entity_id FROM field_data_field_acute_illness_encounter WHERE bundle = 'symptoms_general' AND field_acute_illness_encounter_target_id = $nid LIMIT 1";

$symptom_id = db_query($query)->fetchfield();

if ($symptom_id) {
foreach ($symptoms_general as $symptom) {
$query = 'SELECT ' . $symptom['value'] . ' as value FROM '. $symptom['field'] . ' WHERE entity_id = ' . $symptom_id;
$data = db_query($query)->fetchfield();
if ($data > 1) {
$total_count = $total_count + 1;
break;
}
}
$total_count = $total_count + 1;
$success_count = $success_count + 1;
}
}

$table = new HedleyAdminTextTable(['Encounters', 'Count']);


$data = [];
$data[] = [
'AI Visits within 2 days',
$success_count,
];

$data[] = [
'Total Encounters',
$total_count,
];

drush_print($table->render($data));

$nodes = [];

foreach ($nids as $nid) {
$general = db_query("SELECT COUNT(*) AS counter FROM field_data_field_acute_illness_encounter WHERE bundle = 'symptoms_general' AND field_acute_illness_encounter_target_id = $nid")->fetchfield();
$respiratory = db_query("SELECT COUNT(*) AS counter FROM field_data_field_acute_illness_encounter WHERE bundle = 'symptoms_respiratory' AND field_acute_illness_encounter_target_id = $nid")->fetchfield();
$gi = db_query("SELECT COUNT(*) AS counter FROM field_data_field_acute_illness_encounter WHERE bundle = 'symptoms_gi' AND field_acute_illness_encounter_target_id = $nid")->fetchfield();

$nodes[$nid] = [
'general' => $general,
'respiratory' => $respiratory,
'gi' => $gi,
];

}

$table = new HedleyAdminTextTable(['Encounter ID', 'General', 'Respiratory', 'GI']);

$data =[];
foreach ($nodes as $nid => $value) {
$data[] = [
$nid,
$value['general'],
$value['respiratory'],
$value['gi'],
];
}

// drush_print($table->render($data));

48 changes: 48 additions & 0 deletions server/hedley/modules/custom/hedley_admin/scripts/generate-symptoms-report.php
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,48 @@
<?php

/**
* @file
* AI Symptoms Report.
*
* This report shows the of symptom nodes connected to
* each enconter node by type.
*/

require_once __DIR__ . '/report_common.inc';


drush_print("# Symptoms report");

// Get the list of encounters.
$query = file_get_contents(__DIR__ . '/chic-ai-encounters.SQL');
$results = db_query($query, [':start' => '2023-01-01', ':end' => '2023-01-31'])->fetchAll(PDO::FETCH_ASSOC);

$nodes = [];

foreach ($results as $result) {
$general = db_query("SELECT COUNT(*) AS counter FROM field_data_field_acute_illness_encounter WHERE bundle = 'symptoms_general' AND field_acute_illness_encounter_target_id = $result['nid']")->fetchfield();
$respiratory = db_query("SELECT COUNT(*) AS counter FROM field_data_field_acute_illness_encounter WHERE bundle = 'symptoms_respiratory' AND field_acute_illness_encounter_target_id = $result['nid']")->fetchfield();
$gi = db_query("SELECT COUNT(*) AS counter FROM field_data_field_acute_illness_encounter WHERE bundle = 'symptoms_gi' AND field_acute_illness_encounter_target_id = $result['nid']")->fetchfield();

$nodes[$result['nid']] = [
'general' => $general,
'respiratory' => $respiratory,
'gi' => $gi,
];

}

$table = new HedleyAdminTextTable(['Encounter ID', 'General', 'Respiratory', 'GI']);

$data =[];
foreach ($nodes as $nid => $value) {
$data[] = [
$nid,
$value['general'],
$value['respiratory'],
$value['gi'],
];
}

drush_print($table->render($data));