Python 3.13 Support (#246)

* Update to Python 3.13 across CI workflows and configurations

* Update myst-nb dependency to version 1.1.2

Bump the myst-nb package from version 1.1.1 to 1.1.2 in pyproject.toml. This ensures compatibility improvements or bug fixes provided in the latest release.

* Add Python 3.13 to CI test matrix

This update introduces Python 3.13 to the CI workflow across various test sessions, including pre-commit, tests, mypy, typeguard, xdoctest, and docs-build. It ensures compatibility and validation for Python 3.13 on Ubuntu, Windows, and macOS platforms.

* Ignore Poetry directory in .gitignore

Added `.poetry/` to the `.gitignore` file to prevent local Poetry configuration files from being included in version control. This helps maintain a cleaner repository and avoids unnecessary file tracking.

* Allow py3.13

* allow numba pre-release

* Update `llvmlite` and `numba` to new release candidates.

* rebuild lock file

* Update dependency version syntax in minimum only deps.

* Update numba version constraint to released version in dependencies

---------

Co-authored-by: Altay Sansal <[email protected]>

.github/workflows/release.yaml

@@ -18,7 +18,7 @@ jobs:
       - name: Set up Python
         uses: actions/[email protected]
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: Upgrade pip
         run: |

.github/workflows/tests.yaml

@@ -18,18 +18,20 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - { python: "3.12", os: "ubuntu-latest", session: "pre-commit" }
+          - { python: "3.13", os: "ubuntu-latest", session: "pre-commit" }
+          - { python: "3.13", os: "ubuntu-latest", session: "mypy" }
           - { python: "3.12", os: "ubuntu-latest", session: "mypy" }
           - { python: "3.11", os: "ubuntu-latest", session: "mypy" }
           - { python: "3.10", os: "ubuntu-latest", session: "mypy" }
+          - { python: "3.13", os: "ubuntu-latest", session: "tests" }
           - { python: "3.12", os: "ubuntu-latest", session: "tests" }
           - { python: "3.11", os: "ubuntu-latest", session: "tests" }
           - { python: "3.10", os: "ubuntu-latest", session: "tests" }
-          - { python: "3.12", os: "windows-latest", session: "tests" }
-          - { python: "3.12", os: "macos-latest", session: "tests" }
-          - { python: "3.12", os: "ubuntu-latest", session: "typeguard" }
-          - { python: "3.12", os: "ubuntu-latest", session: "xdoctest" }
-          - { python: "3.12", os: "ubuntu-latest", session: "docs-build" }
+          - { python: "3.13", os: "windows-latest", session: "tests" }
+          - { python: "3.13", os: "macos-latest", session: "tests" }
+          - { python: "3.13", os: "ubuntu-latest", session: "typeguard" }
+          - { python: "3.13", os: "ubuntu-latest", session: "xdoctest" }
+          - { python: "3.13", os: "ubuntu-latest", session: "docs-build" }
 
     env:
       NOXSESSION: ${{ matrix.session }}
@@ -124,7 +126,7 @@ jobs:
       - name: Set up Python
         uses: actions/[email protected]
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: Upgrade pip
         run: |

.gitignore

@@ -76,6 +76,9 @@ docs/jupyter_execute/
 .pybuilder/
 target/
 
+# Poetry
+.poetry/
+
 # Jupyter Notebook
 .ipynb_checkpoints
 

.readthedocs.yaml

@@ -1,8 +1,8 @@
 version: 2
 build:
-  os: ubuntu-22.04
+  os: ubuntu-24.04
   tools:
-    python: "3.12"
+    python: "3.13"
 sphinx:
   configuration: docs/conf.py
 formats: all

noxfile.py

@@ -23,8 +23,8 @@
 
 
 package = "segy"
-python_versions = ["3.12", "3.11", "3.10"]
-nox.needs_version = ">=2023.04.22"
+python_versions = ["3.13", "3.12", "3.11", "3.10"]
+nox.needs_version = ">=2024.10.9"
 nox.options.sessions = (
     "pre-commit",
     "mypy",

pyproject.toml

@@ -6,13 +6,13 @@ authors = [{ name = "Altay Sansal", email = "[email protected]" }]
 license = "Apache-2.0"
 readme = "README.md"
 keywords = ["segy", "seismic", "data", "geophysics"]
-requires-python = ">=3.10,<3.13"
+requires-python = ">=3.10,<3.14"
 dependencies = [
     "fsspec (>=2024.10.0)",
     "numpy (>=2.0.0,<3.0.0)",
     "pydantic (>=2.9.2,<3.0.0)",
     "pydantic-settings (>=2.6.1,<3.0.0)",
-    "numba (>=0.59.1,<0.70.0)",
+    "numba (>=0.61.0,<0.70.0)",
     "pandas (>=2.2.2,<3.0.0)",
     "typer (>=0.13.1,<0.14.0)",
     "rapidfuzz (>=3.10.1,<4.0.0)",
@@ -55,7 +55,7 @@ sphinx = "7.4.7"
 sphinx-design = "^0.6.1"
 sphinx-copybutton = "^0.5.2"
 furo = ">=2024.8.6"
-myst-nb = "^1.1.1"
+myst-nb = "^1.1.2"
 linkify-it-py = "^2.0.3"
 autodoc-pydantic = "^2.2.0"
 sphinxcontrib-typer = "^0.5.0"