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@edkerk edkerk released this 31 Jul 22:58
· 18 commits to main since this release
v2.9.3
49acaa6
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Learn about vigilant mode.
  • fix:
    • ravenCobraWrapper handle empty rxnReferences from COBRA => RAVEN
    • replaceMets should not contract the whole model, only for the replaced metabolites
    • getBlast can handle paths containing spaces, or makes a custom temp path if required (solves #506)
    • importModel with empty confidenceScores entries
    • constructS avoid warning about "Colon operands must be real scalars"
    • randomSampling should output the solutions as full matrix, as sparse matrices occassionally acts weird when using functions like mean
  • feature:
    • getIndexes supports ecenzymes, ecrxns and ecgenes types, to query GECKO3 model.ec fields
  • refactor:
    • speedup readYAMLmodel
  • docs
    • update badges and refer to GitHub Discussions instead of Gitter
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