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# Barron IBD-CDI 2022 | ||
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[![paper](https://img.shields.io/badge/paper-mBio-red)](https://doi.org/10.1128/mbio.01904-22) | ||
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ML analysis to predict _C. difficile_ colonization in fecal communities of IBD & control mice. | ||
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See [config/README.md](config/README.md) for instructions on running this workflow. | ||
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View the main manuscript repository here: [barronmr/antip40_microbiota](https://github.com/barronmr/antip40_microbiota) | ||
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## Citation | ||
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To cite the paper, please use: | ||
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> Barron MR, Sovacool KL, Abernathy-Close L, Vendrov KC, Standke AK, Bergin IL, Schloss PD, Young VB. 2022. Intestinal Inflammation Reversibly Alters the Microbiota to Drive Susceptibility to Clostridioides difficile Colonization in a Mouse Model of Colitis. mBio 0:e01904-22. | ||
A bibtex entry for LaTeX users: | ||
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```tex | ||
@article{barron_intestinal_2022, | ||
title = {Intestinal {{Inflammation Reversibly Alters}} the {{Microbiota}} to {{Drive Susceptibility}} to {{Clostridioides}} Difficile {{Colonization}} in a {{Mouse Model}} of {{Colitis}}}, | ||
author = {Barron, Madeline R. and Sovacool, Kelly L. and {Abernathy-Close}, Lisa and Vendrov, Kimberly C. and Standke, Alexandra K. and Bergin, Ingrid L. and Schloss, Patrick D. and Young, Vincent B.}, | ||
year = {2022}, | ||
month = {jul}, | ||
journal = {mBio}, | ||
volume = {0}, | ||
number = {0}, | ||
pages = {e01904-22}, | ||
publisher = {{American Society for Microbiology}}, | ||
doi = {10.1128/mbio.01904-22}, | ||
copyright = {All rights reserved} | ||
} | ||
``` |