add mapehr.json

SchemaStore · Aug 28, 2024 · f5846aa · f5846aa
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diff --git a/src/api/json/catalog.json b/src/api/json/catalog.json
@@ -3131,6 +3131,12 @@
       "fileMatch": ["*.lsdl.yaml", "*.lsdl.json"],
       "url": "https://json.schemastore.org/lsdlschema.json"
     },
+    {
+      "name": "MapEHR Mapping",
+      "description": "Mapping for MapEHR.com",
+      "fileMatch": [".map.yml", ".map.yaml", ".map.json"],
+      "url": "https://json.schemastore.org/mapehr.json"
+    },
     {
       "name": "A micro editor config",
       "description": "A micro editor config",

diff --git a/src/schemas/json/mapehr.json b/src/schemas/json/mapehr.json
@@ -0,0 +1,312 @@
+{
+  "$id": "https://json.schemastore.org/mapehr.json",
+  "$schema": "http://json-schema.org/draft-07/schema#",
+  "$comment": "https://mapehr.com",
+  "title": "MapEHR Mapping",
+  "description": "Mapping for MapEHR.com v0.1.0",
+  "type": "object",
+  "properties": {
+    "define": {
+      "$ref": "#/definitions/define",
+      "description": "Define keys used in the rules. Example: weight: http://loinc.org/29463-7"
+    },
+    "vars": {
+      "$ref": "#/definitions/vars",
+      "description": "Define variables used in the rules. Example: default_bmi: randomNormalDistribution((27.6863+25.4960)/2, sqrt(18.65))"
+    },
+    "rules": {
+      "$ref": "#/definitions/rules",
+      "description": "Rules for LOINC codes, archetypes, templates."
+    }
+  },
+  "additionalProperties": false,
+  "definitions": {
+    "rules": {
+      "description": "Rules for a LOINC codes, archetypes, templates.",
+      "type": "object",
+      "patternProperties": {
+        "^.+$": {
+          "$ref": "#/definitions/rule",
+          "$comment": "Rules for a LOINC codes, archetypes, templates.",
+          "description": "Rules for a LOINC codes, archetypes, templates."
+        }
+      },
+      "additionalProperties": false
+    },
+    "rule": {
+      "type": "object",
+      "patternProperties": {
+        "^.+$": {
+          "$ref": "#/definitions/rule_code",
+          "description": "Rule for a LOINC code, archetype, template."
+        }
+      },
+      "additionalProperties": false
+    },
+    "rule_code": {
+      "type": "object",
+      "properties": {
+        "set": {
+          "type": "array",
+          "items": {
+            "$ref": "#/definitions/set"
+          },
+          "title": "Set values of elements."
+        },
+        "define": {
+          "$ref": "#/definitions/define",
+          "description": "Define keys used in the rules. Example: weight: http://loinc.org/29463-7"
+        },
+        "vars": {
+          "$ref": "#/definitions/vars",
+          "description": "Define variables used in the rules. Example: default_bmi: randomNormalDistribution((27.6863+25.4960)/2, sqrt(18.65))"
+        },
+        "choices": {
+          "$ref": "#/definitions/choices",
+          "description": "Define a list of choices from which a random item will be used."
+        }
+      },
+      "additionalProperties": false,
+      "required": [
+        "set"
+      ]
+    },
+    "set": {
+      "type": "object",
+      "properties": {
+        "attribute": {
+          "type": "string",
+          "description": "Used to specify an RM attribute."
+        },
+        "path": {
+          "type": "string",
+          "description": "Used to specify an ADL path."
+        },
+        "element": {
+          "$ref": "#/definitions/element",
+          "description": "An RM element."
+        },
+        "elements": {
+          "$ref": "#/definitions/elements",
+          "description": "RM elements."
+        },
+        "from": {
+          "$ref": "#/definitions/from",
+          "description": "Define elements from which the data will be sourced."
+        },
+        "define": {
+          "$ref": "#/definitions/define",
+          "description": "Define keys used in the rules. Example: weight: http://loinc.org/29463-7"
+        },
+        "vars": {
+          "$ref": "#/definitions/vars",
+          "description": "Define variables used in the rules. Example: default_bmi: randomNormalDistribution((27.6863+25.4960)/2, sqrt(18.65))"
+        },
+        "choices": {
+          "$ref": "#/definitions/choices",
+          "description": "Define a list of choices from which a random item will be used."
+        },
+        "value_intervals": {
+          "$ref": "#/definitions/value_intervals",
+          "description": "Value intervals for each key (e.g. units)."
+        },
+        "interpretation_intervals": {
+          "$ref": "#/definitions/interpretation_intervals",
+          "description": "Interpretation intervals for each key (e.g. units)."
+        }
+      },
+      "additionalProperties": false
+    },
+    "elements": {
+      "type": "object",
+      "patternProperties": {
+        "^.+$": {
+          "oneOf": [
+            {
+              "$ref": "#/definitions/element",
+              "description": "An RM element."
+            },
+            {
+              "type": "null",
+              "description": "Leave it empty if you just need to reference this element in a formula."
+            }
+          ]
+        }
+      },
+      "additionalProperties": false
+    },
+    "element": {
+      "type": "object",
+      "properties": {
+        "attribute": {
+          "type": "string",
+          "description": "Used to specify an RM attribute."
+        },
+        "path": {
+          "type": "string",
+          "description": "Used to specify an ADL path."
+        },
+        "elements": {
+          "$ref": "#/definitions/elements",
+          "description": "RM elements."
+        },
+        "value": {
+          "type": "string",
+          "description": "Value of the element. Can use formulas."
+        },
+        "value_type": {
+          "type": "string",
+          "description": "RM type of the element."
+        },
+        "value_interval": {
+          "type": "string",
+          "description": "Value interval."
+        },
+        "value_intervals": {
+          "$ref": "#/definitions/value_intervals",
+          "description": "Value intervals for each key (e.g. units)."
+        },
+        "choice_key": {
+          "type": "string",
+          "description": "The name of the key in the choices to use for this element."
+        },
+        "interpretation_interval": {
+          "$ref": "#/definitions/interpretation_interval",
+          "description": "Interpretation interval for the value."
+        },
+        "interpretation_intervals": {
+          "$ref": "#/definitions/interpretation_intervals",
+          "description": "Interpretation intervals for each key (e.g. units)."
+        },
+        "one_of": {
+          "$ref": "#/definitions/one_of",
+          "description": "List of keys to look for."
+        }
+      },
+      "additionalProperties": false
+    },
+    "value_intervals": {
+      "type": "object",
+      "patternProperties": {
+        "^.+$": {
+          "$ref": "#/definitions/value_interval"
+        }
+      },
+      "additionalProperties": false
+    },
+    "value_interval": {
+      "type": "string"
+    },
+    "interpretation_intervals": {
+      "type": "object",
+      "patternProperties": {
+        "^.+$": {
+          "$ref": "#/definitions/interpretation_interval"
+        }
+      },
+      "additionalProperties": false
+    },
+    "interpretation_interval": {
+      "type": "object",
+      "properties": {
+        "low": {
+          "type": "number",
+          "description": "Low value of the interpretation interval."
+        },
+        "high": {
+          "type": "number",
+          "description": "High value of the interpretation interval."
+        }
+      },
+      "additionalProperties": false,
+      "required": [
+        "low",
+        "high"
+      ]
+    },
+    "one_of": {
+      "type": "array",
+      "items": {
+        "type": "string"
+      }
+    },
+    "from": {
+      "type": "array",
+      "items": {
+        "$ref": "#/definitions/from_item"
+      }
+    },
+    "from_item": {
+      "type": "object",
+      "properties": {
+        "element": {
+          "$ref": "#/definitions/element",
+          "description": "An RM element."
+        },
+        "elements": {
+          "$ref": "#/definitions/elements",
+          "description": "RM elements."
+        },
+        "define": {
+          "$ref": "#/definitions/define",
+          "description": "Define keys used in the rules. Example: weight: http://loinc.org/29463-7"
+        },
+        "vars": {
+          "$ref": "#/definitions/vars",
+          "description": "Define variables used in the rules. Example: default_bmi: randomNormalDistribution((27.6863+25.4960)/2, sqrt(18.65))"
+        }
+      },
+      "additionalProperties": false
+    },
+    "choices": {
+      "type": "array",
+      "items": {
+        "$ref": "#/definitions/choices_map"
+      }
+    },
+    "choices_map": {
+      "type": "object",
+      "$ref": "#/definitions/choices_map_entry"
+    },
+    "choices_map_entry": {
+      "type": "object",
+      "patternProperties": {
+        "^.+$": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "type": "number"
+            },
+            {
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/choices_map_entry"
+            }
+          ]
+        }
+      },
+      "additionalProperties": false
+    },
+    "define": {
+      "type": "object",
+      "patternProperties": {
+        "^.+$": {
+          "type": "string"
+        }
+      },
+      "additionalProperties": false
+    },
+    "vars": {
+      "type": "object",
+      "patternProperties": {
+        "^.+$": {
+          "type": "string"
+        }
+      },
+      "additionalProperties": false
+    }
+  }
+}
diff --git a/src/test/mapehr/blood_pressure.map.yaml b/src/test/mapehr/blood_pressure.map.yaml
@@ -0,0 +1,63 @@
+rules:
+  loinc:
+    # Blood pressure (with ranges)
+    35094-2:  # http://loinc.org/35094-2
+      set:
+        - attribute: data
+          elements:
+            systolic:
+              value_type: Measured<Quantity>
+            diastolic:
+              value_type: Measured<Quantity>
+          define:
+            systolic: http://loinc.org/8480-6
+            diastolic: http://loinc.org/8462-4
+          choices:
+            - systolic:  140..180
+              diastolic:  95..115
+            - systolic:  115..130
+              diastolic:  80.. 90
+            - systolic:   90..110
+              diastolic:  55.. 75
+          interpretation_intervals:
+            systolic:
+              low: 110
+              high: 160
+            diastolic:
+              low: 70
+              high: 105
+        - attribute: qualifiers
+          elements:
+            device:
+              attribute: items
+              elements:
+                device_name:
+                  value_type: Plain_text
+                  choice_key: description
+                medical_device_type:
+                  value_type: Coded_text
+          define:
+            device: http://loinc.org/82307-0
+            device_name: http://loinc.org/74720-4
+            medical_device_type: http://loinc.org/66464-9
+          choices:
+            - code: http://snomed.info/id/309641003
+              description: Aneroid sphygmomanometer
+            - code: http://snomed.info/id/466093008
+              description: Automatic-inflation electronic sphygmomanometer, non-portable
+            - code: http://snomed.info/id/466086009
+              description: Automatic-inflation electronic sphygmomanometer, portable, arm/wrist
+            - code: http://snomed.info/id/466139008
+              description: Automatic-inflation electronic sphygmomanometer, portable, finger
+            - code: http://snomed.info/id/43770009
+              description: Doppler device
+            - code: http://snomed.info/id/469801002
+              description: Invasive blood pressure monitor
+            - code: http://snomed.info/id/469311001
+              description: Manual-inflation electronic sphygmomanometer, non-portable
+            - code: http://snomed.info/id/469676006
+              description: Manual-inflation electronic sphygmomanometer, portable
+            - code: http://snomed.info/id/309642005
+              description: Mercury sphygmomanometer
+            - code: http://snomed.info/id/258057004
+              description: Non-invasive blood pressure monitor