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Merge pull request #42 from Santiso-Group/issue_41 #697

Merge pull request #42 from Santiso-Group/issue_41

Merge pull request #42 from Santiso-Group/issue_41 #697

Triggered via push December 31, 2024 19:32
Status Failure
Total duration 1m 4s
Artifacts 1

CI.yaml

on: push
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Matrix: test
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17 errors and 15 warnings
Test on ubuntu-latest, Python 3.10
The process '/usr/share/miniconda/condabin/conda' failed with exit code 1
Test on ubuntu-latest, Python 3.11
The job was canceled because "ubuntu-latest_3_10" failed.
Test on ubuntu-latest, Python 3.11
The operation was canceled.
Test on ubuntu-latest, Python 3.12
The job was canceled because "ubuntu-latest_3_10" failed.
Test on ubuntu-latest, Python 3.12
The operation was canceled.
Test on windows-latest, Python 3.12
The job was canceled because "ubuntu-latest_3_10" failed.
Test on windows-latest, Python 3.12
The operation was canceled.
Test on macos-latest, Python 3.10
The job was canceled because "ubuntu-latest_3_10" failed.
Test on macos-latest, Python 3.10
The operation was canceled.
Test on macos-latest, Python 3.12
The job was canceled because "ubuntu-latest_3_10" failed.
Test on macos-latest, Python 3.12
The operation was canceled.
Test on macos-latest, Python 3.11
The job was canceled because "ubuntu-latest_3_10" failed.
Test on macos-latest, Python 3.11
The operation was canceled.
Test on windows-latest, Python 3.11
The job was canceled because "ubuntu-latest_3_10" failed.
Test on windows-latest, Python 3.11
The operation was canceled.
Test on windows-latest, Python 3.10
The job was canceled because "ubuntu-latest_3_10" failed.
Test on windows-latest, Python 3.10
The operation was canceled.
Test on ubuntu-latest, Python 3.10
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test on ubuntu-latest, Python 3.10
Unexpected input(s) 'condarc', 'create-args', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
Test on ubuntu-latest, Python 3.10
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Test on ubuntu-latest, Python 3.10
/usr/share/miniconda/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Test on ubuntu-latest, Python 3.10
CondaHTTPError: HTTP 000 CONNECTION FAILED for url <https://conda.anaconda.org/conda-forge/linux-64/repodata.json> Elapsed: - An HTTP error occurred when trying to retrieve this URL. HTTP errors are often intermittent, and a simple retry will get you on your way. 'https//conda.anaconda.org/conda-forge/linux-64'
Test on ubuntu-latest, Python 3.11
Unexpected input(s) 'condarc', 'create-args', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
Test on ubuntu-latest, Python 3.12
Unexpected input(s) 'condarc', 'create-args', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
Test on ubuntu-latest, Python 3.12
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Test on ubuntu-latest, Python 3.12
/usr/share/miniconda/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Test on macos-latest, Python 3.10
Unexpected input(s) 'condarc', 'create-args', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
Test on macos-latest, Python 3.12
Unexpected input(s) 'condarc', 'create-args', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
Test on macos-latest, Python 3.11
Unexpected input(s) 'condarc', 'create-args', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
Test on windows-latest, Python 3.10
Unexpected input(s) 'condarc', 'create-args', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
Paper Draft
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "paper". Please update your workflow to use v4 of the artifact actions. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/

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