108 incompatibility numpy pandas (#109)

* Dev (#94)

* factory method to load embeddings at the w2v format (#53)

* Revert "factory method to load embeddings at the w2v format (#53)"

This reverts commit 7da0e99.

* 52 loading vectors such as w2v or spine ones (#57)

* factory method to load embeddings at the w2v format

* Update graph_embeddings.py, small fix

* Adding distRatio (#59)

* moving dist ratio in sinr.text.evaluate, adding unit tests (#61)

* commenting cosine_dist, pick_intruder, dist_ratio, dist_ratio_dim, intra_sim, inter_sim methods

* moving distRatio from graph_embeddings to text/evaluate

* tests unitaires distratio

* cleaning comments

* adding creation and deletion of w2v file for distRatio unit tests

* fix with_value() argument (#65)

Co-authored-by: Simon Guillot <[email protected]>

* load_from_word2vec model s name bug fixed (#70)

* missing word list bug fixed (#68)

* 73 wrong community memberships update when filtering dimensions (#75)

* update of community_membership when filtering dimensions

* sinr filtered: removing dimensions and updating communities_sets

* fixed code to pass tests

* comments

* 76 preprocessing multiple documents (#77)

* preprocessing by documents

* Tests : preprocessing by sentences and by documents

* adding size indicator for spacy model and downloading spacy model in tests workflow'

* downloading spacy

* 78 classification (#80)

* preprocess : minimal length of documents kept + tests

* vectorizer + test

* classification's methods + tests

* xgboost interpretable dimensions

* adding xgboost for test workflow

* classification, fit and score test modification

* get_dimension_stereotypes on removed community fixed (#82)

* Filtering words using a dictionnary (#84)

* Exceptions list, path to save / load SINrVectors (#86)

* not removing words when in exceptions list

* add path to method save

* exceptions list to set + test exceptions list

* path parameter method load

* new exceptions list for similarity

* optionnal parameter path for load and save methods

* 90 notebooks (#91)

* fix save, load, dim_nnz_thresholds + add obj_nnz_count

* add notebook with gutenberg example

* bnc model for notebook

* notebook bnc

* notebook frwac

* remove nb evaluate

* add tqdm to sparsify method

---------

Co-authored-by: Thibault PROUTEAU <[email protected]>
Co-authored-by: Anna B <[email protected]>
Co-authored-by: Simon Guillot <[email protected]>
Co-authored-by: Simon Guillot <[email protected]>

* Update deploy.yml

* [AUTO-COMMIT] Update release version to v1.3.1. (#96)

Files changed:
M	pyproject.toml
M	sinr/__init__.py

Co-authored-by: nicolasdugue <[email protected]>

* doc update (#97)

* doc update

* links update

* remove doc, quality, build

* fix LICENSE link

* Update conf.py

---------

Co-authored-by: Thibault PROUTEAU <[email protected]>

* Correcting conflict between pandas and numpy

---------

Co-authored-by: Thibault PROUTEAU <[email protected]>
Co-authored-by: Anna B <[email protected]>
Co-authored-by: Simon Guillot <[email protected]>
Co-authored-by: Simon Guillot <[email protected]>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: nicolasdugue <[email protected]>
Co-authored-by: Thibault PROUTEAU <[email protected]>
Co-authored-by: nicolasdugue <[email protected]>

docs/source/publications.rst

@@ -21,5 +21,4 @@ Publications
 
 **Filtering dimensions of SINr embedding**
 
-
 -  Anna Béranger, Nicolas Dugué, Simon Guillot, Thibault Prouteau. Filtering communities in word co-occurrence networks to foster the emergence of meaning. Complex Networks 2023, Menton, France. `⟨hal-04398742v1⟩ <https://hal.science/hal-04398742v1>`__

pyproject.toml

@@ -40,12 +40,12 @@ include = [
 python = ">=3.8,<4.0"
 joblib = ">=1.1.1"
 networkit = "9.1.1"
-numpy = ">=1.21.0"
+numpy = ">=1.26.0"
 scipy = ">=1.6.1"
 scikit-learn = "^1.2.1"
 ipykernel = "^6.21.1"
 tqdm = "^4.64.1"
-pandas = "<=1.3.5"
+pandas = ">=1.3.5"
 tabulate = "^0.9.0"
 leidenalg = "^0.9.1"
 igraph = "^0.10.4"