make downloaded models readable by all users (#31)

Downloaded models are made with mode 0600. This is because they start out as tempfile.NamedTemporaryFile objects, which are by default made with 0600 mode.
SBU-BMI · Oct 29, 2022 · 317b00d · 317b00d
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commit 317b00d
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diff --git a/dockerfiles/tils.dockerfile b/dockerfiles/tils.dockerfile
@@ -10,3 +10,5 @@ ENV WSIRUN_WEIGHTS="TCGA-TILs-v1"
 
 # Download the weights.
 RUN python -c "from wsi_inference.modellib import models; models.$WSIRUN_MODEL(\"$WSIRUN_WEIGHTS\")"
+# Downloaded models are mode 0600. Make them readable by all users.
+RUN chmod -R +r $TORCH_HOME/hub/checkpoints/
diff --git a/dockerfiles/tumor-brca.dockerfile b/dockerfiles/tumor-brca.dockerfile
@@ -10,3 +10,5 @@ ENV WSIRUN_WEIGHTS="TCGA-BRCA-v1"
 
 # Download the weights.
 RUN python -c "from wsi_inference.modellib import models; models.$WSIRUN_MODEL(\"$WSIRUN_WEIGHTS\")"
+# Downloaded models are mode 0600. Make them readable by all users.
+RUN chmod -R +r $TORCH_HOME/hub/checkpoints/
diff --git a/dockerfiles/tumor-luad.dockerfile b/dockerfiles/tumor-luad.dockerfile
@@ -10,3 +10,5 @@ ENV WSIRUN_WEIGHTS="TCGA-LUAD-v1"
 
 # Download the weights.
 RUN python -c "from wsi_inference.modellib import models; models.$WSIRUN_MODEL(\"$WSIRUN_WEIGHTS\")"
+# Downloaded models are mode 0600. Make them readable by all users.
+RUN chmod -R +r $TORCH_HOME/hub/checkpoints/
diff --git a/dockerfiles/tumor-paad.dockerfile b/dockerfiles/tumor-paad.dockerfile
@@ -10,3 +10,5 @@ ENV WSIRUN_WEIGHTS="TCGA-PAAD-v1"
 
 # Download the weights.
 RUN python -c "from wsi_inference.modellib import models; models.$WSIRUN_MODEL(\"$WSIRUN_WEIGHTS\")"
+# Downloaded models are mode 0600. Make them readable by all users.
+RUN chmod -R +r $TORCH_HOME/hub/checkpoints/
diff --git a/dockerfiles/tumor-prad.dockerfile b/dockerfiles/tumor-prad.dockerfile
@@ -10,3 +10,5 @@ ENV WSIRUN_WEIGHTS="TCGA-PRAD-v1"
 
 # Download the weights.
 RUN python -c "from wsi_inference.modellib import models; models.$WSIRUN_MODEL(\"$WSIRUN_WEIGHTS\")"
+# Downloaded models are mode 0600. Make them readable by all users.
+RUN chmod -R +r $TORCH_HOME/hub/checkpoints/