Skip to content

Commit

Permalink
#68 Integrate RDR embeddable figshare content to UCLH research discov…
Browse files Browse the repository at this point in the history
…ery site (ngtube)

1. Add embeddable figshare iframe (RDR) into uclh_ngtube_s0 project
2. Delete the DICOM images and synthetic csv data file
  • Loading branch information
lawrencelai committed Apr 24, 2024
1 parent e30df3c commit d081957
Show file tree
Hide file tree
Showing 15 changed files with 2 additions and 321 deletions.
4 changes: 1 addition & 3 deletions _projects/uclh_ngtube_s0/_03_data.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,9 +6,7 @@ These data are modelled using the OMOP Common Data Model v5.3.

The name of the file corresponds to the table in the OMOP CDM.

- [person](data/person.csv)
- [procedure_occurrence](data/procedure_occurrence.csv)
- [visit_occurrence](data/visit_occurrence.csv)
<iframe src="https://widgets.figshare.com/articles/25676298/embed?show_title=0" width="568" height="351" allowfullscreen frameborder="0"></iframe>

## Correlated Data Source

Expand Down
11 changes: 1 addition & 10 deletions _projects/uclh_ngtube_s0/_04_image.md
Original file line number Diff line number Diff line change
Expand Up @@ -11,16 +11,7 @@ The RANZCR CLiP dataset was used to train the model. [3] This dataset has been c
Computational Information
Training has been conducted using RTX 6000 cards with 24GB of graphics memory. A checkpoint was created after each epoch was saved with 220 checkpoints being generated so far. Each checkpoint takes up 1GB space in memory. Generating each epoch takes around 6 hours. Machine learning libraries such as TensorFlow, PyTorch, or scikit-learn are used to run the training, along with additional libraries for data preprocessing, visualization, or deployment.

![Synthetic CXR Example 01](./images/1.png)
![Synthetic CXR Example 02](./images/2_2.png)
![Synthetic CXR Example 03](./images/10.png)
![Synthetic CXR Example 04](./images/20.png)
![Synthetic CXR Example 05](./images/36_2.png)
![Synthetic CXR Example 06](./images/37.png)
![Synthetic CXR Example 07](./images/39.png)
![Synthetic CXR Example 08](./images/44_2.png)
![Synthetic CXR Example 09](./images/44.png)
![Synthetic CXR Example 10](./images/45.png)
<iframe src="https://widgets.figshare.com/articles/25676277/embed?show_title=0" width="568" height="351" allowfullscreen frameborder="0"></iframe>

## References

Expand Down
101 changes: 0 additions & 101 deletions _projects/uclh_ngtube_s0/data/person.csv

This file was deleted.

Loading

0 comments on commit d081957

Please sign in to comment.