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update script to use s3
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RobotSail committed Oct 25, 2024
1 parent accaaae commit e048e29
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32 changes: 28 additions & 4 deletions .github/workflows/print-loss.yml
Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
# SPDX-License-Identifier: Apache-2.0
name: Print Loss

on:
Expand All @@ -22,14 +23,37 @@ jobs:

- name: Install dependencies
run: |
python -m pip install --upgrade pip
# python -m pip install --upgrade pip
pip install -r requirements-dev.txt
- name: Generate test data
run: |
printf '{"total_loss": 2.0}\n{"total_loss": 1.8023}\n{"total_loss": 1.52324}\n{"total_loss": 1.3234}' > test-log.jsonl
ls -al
- name: Print loss
- name: Configure AWS credentials
uses: aws-actions/configure-aws-credentials@e3dd6a429d7300a6a4c196c26e071d42e0343502 # v4.0.2
with:
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
aws-region: ${{ vars.AWS_REGION }}
- name: Try to upload to s3
run: |
python scripts/create-loss-graph.py markdown --log-file test-log.jsonl --output-file 'results.md'
cat 'results.md' >> "${GITHUB_STEP_SUMMARY}"
echo "$(which aws)"
bucket_name='os-ci-loss-curve-test'
output_file='./test.md'
python scripts/create-loss-graph.py --source file \
--log-file test-log.jsonl \
--output-file "${output_file}" \
--aws-region "${{ vars.AWS_REGION }}" \
--bucket-name "${bucket_name}" \
--base-branch "${{ github.event.pull_request.base.ref }}" \
--pr-number "${{ github.event.pull_request.number }}" \
--head-sha "${{ github.event.pull_request.head.sha }}" \
--origin-repository "${{ github.repository }}"
cat "${output_file}" >> "${GITHUB_STEP_SUMMARY}"
echo "test 1: https://github.com/${{ github.repository }}/commit/${{ github.sha }}"
echo "test 2: ${{ github.event.pull_request.html_url }}/commits/${{ github.sha }}"
3 changes: 2 additions & 1 deletion requirements-dev.txt
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
# SPDX-License-Identifier: Apache-2.0

-r requirements.txt
# blot this out
# -r requirements.txt

pre-commit>=3.0.4,<5.0
pylint>=2.16.2,<4.0
Expand Down
216 changes: 174 additions & 42 deletions scripts/create-loss-graph.py
Original file line number Diff line number Diff line change
@@ -1,16 +1,33 @@
# SPDX-License-Identifier: Apache-2.0
# Standard
from argparse import ArgumentParser, Namespace
from base64 import b64encode
from io import BytesIO
from argparse import ArgumentParser
from base64 import b64decode
from pathlib import Path
from subprocess import run
from typing import List
import json
import os

# Third Party
from matplotlib import pyplot as plt
from pydantic import BaseModel

ENV_VAR_NAME = "LOSS_DATA"

def create_b64_data(log_file: Path) -> str:

class Arguments(BaseModel):
log_file: str | None = None
source: str ## one of: file, env
output_file: str
aws_region: str
bucket_name: str
base_branch: str
pr_number: str
head_sha: str
origin_repository: str


def render_image(loss_data: List[float], outfile: Path) -> str:
log_file = Path(args.log_file)
if not log_file.exists():
raise FileNotFoundError(f'log file "{args.log_file}" does not exist')
Expand All @@ -30,56 +47,171 @@ def create_b64_data(log_file: Path) -> str:
plt.ylabel("Loss")
plt.title("Training performance over fixed dataset")

buf = BytesIO()
plt.savefig(buf, format="png")
buf.seek(0)
if outfile.exists():
outfile.unlink()

plt.savefig(outfile, format="png")


def read_loss_data(src: str, log_file: Path | None = None) -> List[float]:
match src:
case "env":
data = os.getenv(ENV_VAR_NAME, None)
if not data:
raise ValueError(f"Environment variable {ENV_VAR_NAME} not set")
# decode the base64 data
data = b64decode(data)
case "file":
if not log_file:
raise ValueError("log_file must be provided when source is file")
if not log_file.exists():
raise FileNotFoundError(f"Log file {log_file} does not exist")
if log_file.is_dir():
raise ValueError(f"Log file {log_file} is a directory")
with open(log_file, "r") as f:
data = f.read()
case _:
raise ValueError(f"Unknown source: {src}")

imgb64 = b64encode(buf.read()).decode("utf-8")
return imgb64
# select the loss data
contents = [json.loads(l) for l in data.splitlines()]
loss_data = [item["total_loss"] for item in contents if "total_loss" in item]

if not loss_data:
raise ValueError("Loss data is empty")

def create_md_file(b64_data: str, output_file: Path | None):
content = f"""## Training Performance\n
# ensure that the loss data is valid
if not all(isinstance(l, float) for l in loss_data):
raise ValueError("Loss data must be a list of floats")

![Training Performance](data:image/png;base64,{b64_data})
"""
if not output_file:
print(content)
else:
output_file.write_text(content, encoding="utf-8")
return loss_data


def main(args: Namespace):
imgb64 = create_b64_data(args.log_file)
def write_to_s3(
file: Path,
bucket_name: str,
destination: str,
):
if not file.exists():
raise RuntimeError(f"File {file} does not exist")

output_file = Path(args.output_file) if args.output_file else None
if output_file:
output_file.write_text(imgb64, encoding="utf-8")
s3_path = f"s3://{bucket_name}/{destination}"
results = run(
["aws", "s3", "cp", str(file), s3_path], capture_output=True, check=True
)
if results.returncode != 0:
raise RuntimeError(f"failed to upload to s3: {results.stderr.decode('utf-8')}")
else:
# just print the file without including a newline, this way it can be piped
print(imgb64, end="")
print(results.stdout.decode("utf-8"))


def get_destination_path(base_ref: str, pr_number: str, head_sha: str):
return f"pulls/{base_ref}/{pr_number}/{head_sha}/loss-graph.png"


def write_md_file(
output_file: Path, url: str, pr_number: str, head_sha: str, origin_repository: str
):
commit_url = f"https://github.com/{origin_repository}/commit/{head_sha}"
md_template = f"""
# Loss Graph for PR {args.pr_number} [({args.head_sha[:5]})]({commit_url})
![Loss Graph]({url})
"""
output_file.write_text(md_template, encoding="utf-8")


def get_url(bucket_name: str, destination: str, aws_region: str) -> str:
return f"https://{bucket_name}.s3.{aws_region}.amazonaws.com/{destination}"


def main(args: Arguments):
# first things first, we create the png file to upload to S3
log_file = Path(args.log_file) if args.log_file else None
loss_data = read_loss_data(src=args.source, log_file=log_file)
output_image = Path("/tmp/loss-graph.png")
output_file = Path(args.output_file)
render_image(loss_data=loss_data, outfile=output_image)
destination_path = get_destination_path(
base_ref=args.base_branch, pr_number=args.pr_number, head_sha=args.head_sha
)
write_to_s3(
file=output_image, bucket_name=args.bucket_name, destination=destination_path
)
s3_url = get_url(
bucket_name=args.bucket_name,
destination=destination_path,
aws_region=args.aws_region,
)
write_md_file(
output_file=output_file,
url=s3_url,
pr_number=args.pr_number,
head_sha=args.head_sha,
origin_repository=args.origin_repository,
)
print(f"Loss graph uploaded to '{s3_url}'")
print(f"Markdown file written to '{output_file}'")


if __name__ == "__main__":
parser = ArgumentParser()
subparsers = parser.add_subparsers(dest="command", required=True)

image_parser = subparsers.add_parser("image")
image_parser.add_argument("--log-file", type=str, required=True)
image_parser.add_argument("--output-file", type=str, default=None)

markdown_parser = subparsers.add_parser("markdown")
markdown_parser.add_argument("--log-file", type=str, required=True)
markdown_parser.add_argument("--output-file", type=str, default=None)
parser.add_argument(
"--source",
choices=["file", "env"],
default="file",
help="Source of the log file to read the loss data from. If file is selected, then we will read from the given file. If env is selected, we will read from the LOSS_DATA environment variable. If writing to env, the result should be a base64-encoded JSONL file.",
)
parser.add_argument(
"--log-file",
type=str,
default=None,
help="The log file to read the loss data from.",
)
parser.add_argument(
"--output-file",
type=str,
required=True,
help="The output file where the resulting markdown will be written.",
)
parser.add_argument(
"--aws-region",
type=str,
required=True,
help="S3 region to which the bucket belongs.",
)
parser.add_argument(
"--bucket-name", type=str, required=True, help="The S3 bucket name"
)
parser.add_argument(
"--base-branch",
type=str,
required=True,
help="The base branch being merged to.",
)
parser.add_argument("--pr-number", type=str, required=True, help="The PR number")
parser.add_argument(
"--head-sha", type=str, required=True, help="The head SHA of the PR"
)
parser.add_argument(
"--origin-repository",
type=str,
required=True,
help="The repository to which the originating branch belongs to.",
)

args = parser.parse_args()
match args.command:
case "image":
print("creating image")
main(args)
case "markdown":
print("creating md file")
b64_data = create_b64_data(log_file=Path(args.log_file))
create_md_file(b64_data=b64_data, output_file=Path(args.output_file))
case _:
raise ValueError(f"Unknown command: {args.command}")

arguments = Arguments(
log_file=args.log_file,
source=args.source,
output_file=args.output_file,
aws_region=args.aws_region,
bucket_name=args.bucket_name,
base_branch=args.base_branch,
pr_number=args.pr_number,
head_sha=args.head_sha,
origin_repository=args.origin_repository,
)
main(arguments)
58 changes: 58 additions & 0 deletions scripts/render-results.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,58 @@
#!/bin/bash
# SPDX-License-Identifier: Apache-2.0

set -eo pipefail

# This script exists to upload data to s3 and render the final markdown
# file for the results of the benchmarking.

function upload_to_s3() {
local -r bucket_name="$1"
local -r file_path="$2"
local -r destination_path="$3"

local -r bucket_path="s3://${bucket_name}/${destination_path}"
printf 'Uploading result to S3: %s\n' "${bucket_path}"
if [[ ! -f "${file_path}" ]]; then
echo "Error: File '${file_path}' does not exist."
exit 1
fi
aws s3 cp "${file_path}" "${bucket_path}"
}

################################################################################
# Returns the path to where we'll be uploading the loss.png file to.
# Currently, the format is in the form of:
# pulls/<base_branch>/<pr_number>/<sha>/loss.png
# This way, a single PR can have multiple runs and we can keep track of them.
# Globals:
# github (read-only) - The github context
# Arguments:
# None
# Returns:
# (string) The path to where we'll be uploading the loss.png file to.
################################################################################
function get_s3_path() {
printf 'pulls/%s/%s/%s/loss.png' "${{ github.event.pull_request.base.ref }}" "${{ github.event.pull_request.number }}" "${{ github.event.pull_request.head.sha}}"
}

function export_results() {
local -r img_url="$1"
printf '### Test performance:\n\n![Loss curve](%s)\n' "${img_url}" >> "${GITHUB_STEP_SUMMARY}"
}

function main() {
local -r output_path=$(get_s3_path)
local -r bucket_name='os-ci-loss-curve-test'
local -r access_region="${{ vars.AWS_REGION }}"
local -r input_file='./loss.png'
local -r final_url="https://${bucket_name}.s3.${access_region}.amazonaws.com/${output_path}"

printf 'Uploading image "%s" to bucket "%s" at output path "%s"\n' "${input_file}" "${bucket_name}" "${output_path}"
upload_to_s3 "${bucket_name}" "${input_file}" "${output_path}"

printf 'Final url should be: "%s"\n' "${final_url}"
export_results "${final_url}"
}

main

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