R-CMD-check-occasional #17
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| on: | |
| schedule: | |
| - cron: '17 13 18 * *' # 18th of month at 13:17 UTC | |
| # A more complete suite of checks to run monthly; each PR/merge need not pass all these, but they should pass before CRAN release | |
| name: R-CMD-check-occasional | |
| jobs: | |
| R-CMD-check-occasional: | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }} (${{ matrix.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macOS-latest, windows-latest, ubuntu-latest] | |
| r: ['devel', 'release', '3.3', '3.4', '3.5', '3.6', '4.0', '4.1', '4.2', '4.3'] | |
| locale: ['en_US.utf8', 'zh_CN.utf8', 'lv_LV.utf8'] # Chinese for translations, Latvian for collate order (#3502) | |
| exclude: | |
| # only run non-English locale CI on Ubuntu | |
| - os: macOS-latest | |
| locale: 'zh_CN.utf8' | |
| - os: macOS-latest | |
| locale: 'lv_LV.utf8' | |
| - os: windows-latest | |
| locale: 'zh_CN.utf8' | |
| - os: windows-latest | |
| locale: 'lv_LV.utf8' | |
| # macOS/arm64 only available for R>=4.1.0 | |
| - os: macOS-latest | |
| r: '3.3' | |
| - os: macOS-latest | |
| r: '3.4' | |
| - os: macOS-latest | |
| r: '3.5' | |
| - os: macOS-latest | |
| r: '3.6' | |
| - os: macOS-latest | |
| r: '4.0' | |
| - os: macOS-latest | |
| r: '4.1' | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Set locale | |
| if: matrix.os == 'ubuntu-latest' && matrix.locale == 'en_US.utf8' | |
| run: | | |
| sudo locale-gen en_US | |
| echo "LC_ALL=en_US.utf8" >> $GITHUB_ENV | |
| - name: Set locale | |
| if: matrix.locale == 'zh_CN.utf8' | |
| run: | | |
| sudo locale-gen 'zh_CN.utf8' | |
| echo "LC_ALL=zh_CN.utf8" >> $GITHUB_ENV | |
| echo "LANGUAGE=zh_CN" >> $GITHUB_ENV | |
| - name: Set locale | |
| if: matrix.locale == 'lv_LV.utf8' | |
| run: | | |
| sudo locale-gen 'lv_LV.utf8' | |
| echo "LC_ALL=lv_LV.utf8" >> $GITHUB_ENV | |
| echo "LANGUAGE=lv_LV" >> $GITHUB_ENV | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r }} | |
| - name: Install check dependencies (Ubuntu) | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev | |
| - name: Install check dependencies (macOS) | |
| if: matrix.os == 'macOS-latest' | |
| run: brew install gdal proj | |
| - name: Install remotes | |
| env: | |
| R_LIBS_USER: /home/runner/work/r-lib | |
| run: install.packages("remotes") | |
| shell: Rscript {0} | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| env: | |
| R_LIBS_USER: /home/runner/work/r-lib | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Check | |
| env: | |
| # several Suggests dependencies have R dependencies more recent than ours | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_TESTS_NLINES_: 0 | |
| R_LIBS_USER: /home/runner/work/r-lib | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| install.packages("remotes") # different R_LIBS_USER now... | |
| remotes::install_deps(dependencies=TRUE, force=TRUE) | |
| # we define this in data.table namespace, but it appears to be exec | |
| if (!exists("isFALSE", "package:base")) { # R>=3.5.0 | |
| if (!exists("isFALSE", asNamespace("data.table"))) { | |
| message("isFALSE not found in base, but data.table did not define it either!\n") | |
| } | |
| # attempt defining it here as a workaround... | |
| isFALSE = function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x | |
| } | |
| other_deps_expr = parse('inst/tests/other.Rraw', n=1L) | |
| eval(other_deps_expr) | |
| other_pkgs = get(as.character(other_deps_expr[[1L]][[2L]])) | |
| # Many will not install on oldest R versions | |
| try(remotes::install_cran(c(other_pkgs, "rcmdcheck"), force=TRUE)) | |
| has_other_pkg = sapply(other_pkgs, requireNamespace, quietly=TRUE) | |
| run_other = all(has_other_pkg) | |
| if (!run_other) { | |
| message(sprintf("Skipping other.Rraw since some required packages are not available: %s\n", toString(other_pkgs[!has_other_pkg]))) | |
| } | |
| message("Will try and set TEST_DATA_TABLE_WITH_OTHER_PACKAGES=", as.character(run_other), " in R CMD check.") | |
| # IINM rcmdcheck isolates its env from the calling process', besides what's passed to env= | |
| env = c( | |
| TEST_DATA_TABLE_WITH_OTHER_PACKAGES=as.character(run_other), | |
| R_LIBS_USER=Sys.getenv("R_LIBS_USER") | |
| ) | |
| do_vignettes = requireNamespace("knitr", quietly=TRUE) | |
| build_args = NULL | |
| check_args = c("--no-manual", "--as-cran") | |
| if (!do_vignettes) { | |
| message("Skipping vignettes since knitr is unavailable.") | |
| build_args = "--no-build-vignettes" | |
| check_args = c(check_args, "--no-build-vignettes", "--ignore-vignettes") | |
| } | |
| if (requireNamespace("rcmdcheck", quietly=TRUE)) { | |
| rcmdcheck::rcmdcheck(args = check_args, build_args = build_args, error_on = "warning", check_dir = "check", env=env) | |
| } else { | |
| Rbin = if (.Platform$OS.type == "windows") "R.exe" else "R" | |
| system2(Rbin, c("CMD", "build", ".", build_args)) | |
| dt_tar = list.files(pattern = "^data[.]table_.*[.]tar[.]gz$") | |
| if (!length(dt_tar)) stop("Built tar.gz not found among: ", toString(list.files())) | |
| res = system2(Rbin, c("CMD", "check", dt_tar[1L], check_args), stdout=TRUE, env=sprintf("%s=%s", names(env), env)) | |
| if (!is.null(attr(res, "status")) || grep("^Status:.*(ERROR|WARNING)", res)) { | |
| writeLines(res) | |
| stop("R CMD check failed") | |
| } | |
| } | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.r }}-l${{ matrix.locale }}results | |
| path: check |