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Radiobiology-Informatics-Consortium · Apr 26, 2024 · e51a33e · e51a33e
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diff --git a/rbo-base.owl b/rbo-base.owl
@@ -1,23 +1,24 @@
 <?xml version="1.0"?>
 <rdf:RDF xmlns="http://purl.obolibrary.org/obo/rbo/rbo-base.owl#"
      xml:base="http://purl.obolibrary.org/obo/rbo/rbo-base.owl"
-     xmlns:dc="http://purl.org/dc/elements/1.1/"
+     xmlns:dce="http://purl.org/dc/elements/1.1/"
      xmlns:obo="http://purl.obolibrary.org/obo/"
      xmlns:owl="http://www.w3.org/2002/07/owl#"
      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:xml="http://www.w3.org/XML/1998/namespace"
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
      xmlns:core="http://purl.obolibrary.org/obo/uberon/core#"
+     xmlns:obda="https://w3id.org/obda/vocabulary#"
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
-     xmlns:terms="http://purl.org/dc/terms/"
+     xmlns:dcterms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/rbo-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-29/rbo-base.owl"/>
-        <dc:description>RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.</dc:description>
-        <dc:title>Radiation Biology Ontology</dc:title>
-        <dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
-        <terms:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2024-02-29</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/rbo-base.owl"/>
+        <dce:description>RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.</dce:description>
+        <dce:title>Radiation Biology Ontology</dce:title>
+        <dce:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
+        <dcterms:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -99,6 +100,12 @@
 
 
 
+    <!-- http://purl.org/dc/elements/1.1/type -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/type"/>
+
+
+
     <!-- http://purl.org/dc/terms/license -->
 
     <owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
@@ -1926,7 +1933,7 @@
     <!-- http://purl.obolibrary.org/obo/RBO_00002008 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00002008">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00002007"/>
         <obo:IAO_0000115>Planned exposure to radiation generated through a device or exposure to a source emitting ionising radiation</obo:IAO_0000115>
         <obo:IAO_0000117>0000-0002-5111-7263</obo:IAO_0000117>
@@ -4952,5 +4959,5 @@
 
 
 
-<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
 
diff --git a/rbo-full.owl b/rbo-full.owl
diff --git a/rbo.owl b/rbo.owl
diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -338,7 +338,7 @@ $(COMPONENTSDIR)/%: | $(COMPONENTSDIR)
 # Mirroring upstream ontologies
 # ----------------------------------------
 
-IMP=false# Global parameter to bypass import generation
+IMP=true # Global parameter to bypass import generation
 MIR=false # Global parameter to bypass mirror generation
 IMP_LARGE=false # Global parameter to bypass handling of large imports
 

diff --git a/src/ontology/components/all_templates.owl b/src/ontology/components/all_templates.owl
@@ -9,7 +9,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/components/all_templates.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/components/all_templates.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/components/all_templates.owl"/>
     </owl:Ontology>
 
 
@@ -1635,7 +1635,7 @@
     <!-- http://purl.obolibrary.org/obo/RBO_00002008 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00002008">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00002007"/>
         <obo:IAO_0000115>Planned exposure to radiation generated through a device or exposure to a source emitting ionising radiation</obo:IAO_0000115>
         <obo:IAO_0000117>0000-0002-5111-7263</obo:IAO_0000117>

diff --git a/src/ontology/imports/bfo_import.owl b/src/ontology/imports/bfo_import.owl
@@ -11,9 +11,9 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:terms="http://purl.org/dc/terms/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/bfo_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/bfo_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/bfo_import.owl"/>
         <dc:source rdf:resource="http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/chebi_import.owl b/src/ontology/imports/chebi_import.owl
@@ -10,8 +10,8 @@
      xmlns:chebi="http://purl.obolibrary.org/obo/chebi/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/chebi_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/chebi_import.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/chebi_import.owl"/>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/chmo_import.owl b/src/ontology/imports/chmo_import.owl
@@ -12,9 +12,9 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/chmo_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/chmo_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/chmo_import.owl"/>
         <dc:source rdf:resource="http://purl.obolibrary.org/obo/chmo/releases/2022-04-19/chmo.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/cob_import.owl b/src/ontology/imports/cob_import.owl
@@ -10,8 +10,8 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:terms="http://purl.org/dc/terms/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/cob_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/cob_import.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/cob_import.owl"/>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/efo_import.owl b/src/ontology/imports/efo_import.owl
@@ -16,8 +16,8 @@
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
      xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/efo_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/efo_import.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/efo_import.owl"/>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/envo_import.owl b/src/ontology/imports/envo_import.owl
@@ -19,8 +19,8 @@
      xmlns:taxslim="http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/envo_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-08/imports/envo_import.owl"/>
-        <owl:versionInfo>2024-02-08</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/envo_import.owl"/>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/go_import.owl b/src/ontology/imports/go_import.owl
@@ -12,9 +12,9 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/go_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/go_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/go_import.owl"/>
         <dc:source rdf:resource="http://purl.obolibrary.org/obo/go/releases/2024-01-17/go.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/ncbitaxon_import.owl b/src/ontology/imports/ncbitaxon_import.owl
@@ -11,8 +11,8 @@
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
      xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/ncbitaxon_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/ncbitaxon_import.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/ncbitaxon_import.owl"/>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/obi_import.owl b/src/ontology/imports/obi_import.owl
@@ -12,9 +12,9 @@
      xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/obi_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/obi_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/obi_import.owl"/>
         <dc:source rdf:resource="http://purl.obolibrary.org/obo/obi/2024-01-09/obi.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl
@@ -24,8 +24,8 @@
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
      xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/pato_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/pato_import.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/pato_import.owl"/>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/pco_import.owl b/src/ontology/imports/pco_import.owl
@@ -17,9 +17,9 @@
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/pco_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/pco_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/pco_import.owl"/>
         <dc:source rdf:resource="http://purl.obolibrary.org/obo/pco/releases/2021-05-03/pco.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl
@@ -18,9 +18,9 @@
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/ro_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/ro_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/ro_import.owl"/>
         <dc:source rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2023-08-18/ro.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/uberon_import.owl b/src/ontology/imports/uberon_import.owl
@@ -32,8 +32,8 @@
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
      xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/uberon_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/uberon_import.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/uberon_import.owl"/>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/uo_import.owl b/src/ontology/imports/uo_import.owl
@@ -8,8 +8,8 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/imports/uo_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-02-06/imports/uo_import.owl"/>
-        <owl:versionInfo>2024-02-06</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2024-04-26/imports/uo_import.owl"/>
+        <owl:versionInfo>2024-04-26</owl:versionInfo>
     </owl:Ontology>