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Lazy functionality 1 2#6537

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Nic-Ma merged 210 commits intoProject-MONAI:devProject-MONAI/MONAI:devfrom atbenmurray:lazy_functionality_1_2atbenmurray/MONAI:lazy_functionality_1_2Copy head branch name to clipboardJun 1, 2023

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Commits on Mar 27, 2023

• Initial commit

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Commits on Mar 28, 2023

• Refactors and simplification of api / calls

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• Refactoring functional spatial transform to support lazy_evaluation parameter, refactoring spatial arrays to support lazy_evaluation call time parameter, refactoring _apply_transform to pass call t…

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• Making lazy_evaluation parameter consistent across spatial array lazy transforms

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Commits on Mar 29, 2023

• Updating apply and dictionary spatial transforms to support

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• Missing changes to spatial dictionary

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• Enable call-time overriding of lazy_evaluation in croppad/functional and

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• Updating croppad dictionary and croppad array for call-time laziness

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• Fix for push_transform; updating the lazy integration test

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Commits on Mar 30, 2023

• removing issue.txt

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Commits on Mar 31, 2023

• . Renaming apply_transform to apply_pending as it is more semantically

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• Tweaked array ApplyPending and ApplyPendingd for array and dict data

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• Missing import for apply_pending

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Commits on Apr 14, 2023

• Merge branch 'dev' into lazy_eval_refactor

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• Fixing issues with pad_func post merge

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• Fixing issues in crop while running unit tests

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• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

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• Fixing issues with OneOf/SomeOf/RandomOrder after dev merge

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• More croppad fixes post dev merge

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• Fixing test_nvtx_decorator after def merge

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Commits on Apr 23, 2023

• Removed use of **kwargs parameter in tests as it isn't supported by apply_pending. Fixing various tests by moving to use of 'overrides' on apply_pending

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• Setting use of lazy_evaluation to False for Rand2D/Rand3DElastic

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• Fixed test_spatial_pad

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• Renaming lazy_evaluation to lazy

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• Fixed all outstanding usages of apply_pending in tests. Removed the

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Commits on Apr 24, 2023

• Merge branch 'dev' into lazy_eval_refactor

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• Renaming surviving lazy_evaluation instances to lazy.

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• Renamed the last errant 'lazy_evaluation' instances to 'lazy'

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• Fixing ruff errors for over-long line lengths

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• Fix for issue when the 'lazy' property is set to None

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• Fix for _apply_transform when lazy is None, post merge tidy up

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• Making default for overrides be None instead of {}.

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• Changed execute_pending_transforms to not make a shallow copy of dictionary 'data' objects

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Commits on Apr 25, 2023

• Fix for tests/tests_integration_lazy_samples. The modified lazy

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• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

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• Fixing bug introduced by flake8 fix

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• Merge branch 'dev' into lazy_eval_refactor

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• Removal of obsolete lazy eval code

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• Adding documentation for ApplyPending/ApplyPendingd. Adding more

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• Restoring lazy.setters for croppad and spatial lazy transforms

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• Undoing the previous commit until I get to the bottom of the randaffined

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Commits on Apr 26, 2023

• Making apis for OneOf/SomeOf/RandomOrder consistent with Compose

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• Removing partial docstring for 'lazy', which isn't on the init parameter

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• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

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• Adding execute_pending_transforms to lazy/functional __all__

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• Removing LazyMode; lazy is now True / False / None

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• Renamed execute_pending_transforms to apply_pending_transforms.

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• Removed "LazyMode" from enums.py __all__

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• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

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• Modified ApplyPending/ApplyPendingd in the light of the override issue

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• Making apply_transform logger_name None by default

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• Added a dictionary test to the compose logging test suite

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Commits on Apr 27, 2023

• Updated docstring for _apply_transform

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• Removed spurious empty string at the end of one of the logging test case

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• All spatial transforms now initialize LazyTransform correctly

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• Adding setters for lazy back in.

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• Merge branch 'dev' into lazy_eval_refactor

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• Sorting out line length complaint in compose logging tests

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• Using get_logger so that named loggers all get set up correctly

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Commits on Apr 28, 2023

• Fixes for logging; additional compose logging tests; missing imports

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• Adding ApplyPending and ApplyPendingd to transforms.rst

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• Fixed transforms.rst modifications

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Commits on May 2, 2023

• Refactor of lazy to provide in_order and out_of_order lazy execution

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• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

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• Tidied up __all__ issues caused by refactor

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• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

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• Removed can_invert flag from compose compiler policy

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Commits on May 3, 2023

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• Lazy {reorder: lazy_last_nosync} now passes

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Commits on May 4, 2023

• Fixed broken call to isinstance in lazy executors

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Commits on May 6, 2023

• Removing unused Sequence import from lazy/executors

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• Renaming ComposeCompiler to ExecuteOptions in test_compose

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Commits on May 10, 2023

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• Execution options is no longer a poltergeist. Refactored is_tensor_invertible. Removed LAZY from default transform_info(). It is now added during 'track_transform_meta'

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