Code

Lazy eval refactor#6257

Code

Closed

atbenmurray wants to merge 141 commits intoProject-MONAI:devProject-MONAI/MONAI:devfrom atbenmurray:lazy_eval_refactoratbenmurray/MONAI:lazy_eval_refactorCopy head branch name to clipboard

+2,968-913

Commits

Commits on Mar 27, 2023

• Initial commit

  Show description for 06d5842
  atbenmurray

  committed
  06d5842

  Copy full SHA for 06d5842

Commits on Mar 28, 2023

• Refactors and simplification of api / calls

  Show description for 2507a0b
  atbenmurray

  committed
  2507a0b

  Copy full SHA for 2507a0b

• Refactoring functional spatial transform to support lazy_evaluation parameter, refactoring spatial arrays to support lazy_evaluation call time parameter, refactoring _apply_transform to pass call t…

  Show description for 56b618e
  atbenmurray

  committed
  56b618e

  Copy full SHA for 56b618e

• Making lazy_evaluation parameter consistent across spatial array lazy transforms

  Show description for 315e5b7
  atbenmurray

  committed
  315e5b7

  Copy full SHA for 315e5b7

Commits on Mar 29, 2023

• Updating apply and dictionary spatial transforms to support

  Show description for 4e69313
  atbenmurray

  committed
  4e69313

  Copy full SHA for 4e69313

• Missing changes to spatial dictionary

  Show description for 99fa35b
  atbenmurray

  committed
  99fa35b

  Copy full SHA for 99fa35b

• Enable call-time overriding of lazy_evaluation in croppad/functional and

  Show description for a798e0e
  atbenmurray

  committed
  a798e0e

  Copy full SHA for a798e0e

• Updating croppad dictionary and croppad array for call-time laziness

  Show description for 114b8cc
  atbenmurray

  committed
  114b8cc

  Copy full SHA for 114b8cc

• Fix for push_transform; updating the lazy integration test

  Show description for 5df4261
  atbenmurray

  committed
  5df4261

  Copy full SHA for 5df4261

Commits on Mar 30, 2023

• removing issue.txt

  Show description for 84d65f7
  atbenmurray

  committed
  84d65f7

  Copy full SHA for 84d65f7

Commits on Mar 31, 2023

• . Renaming apply_transform to apply_pending as it is more semantically

  Show description for 7ec442f
  atbenmurray

  committed
  7ec442f

  Copy full SHA for 7ec442f

• Tweaked array ApplyPending and ApplyPendingd for array and dict data

  Show description for 8f62776
  atbenmurray

  committed
  8f62776

  Copy full SHA for 8f62776

• Added missing license text.

  Show description for 2492223
  atbenmurray

  committed
  2492223

  Copy full SHA for 2492223

• Missing import for apply_pending

  Show description for 0064326
  atbenmurray

  committed
  0064326

  Copy full SHA for 0064326

Commits on Apr 14, 2023

• Merge branch 'dev' into lazy_eval_refactor

  Show description for 0646602
  atbenmurray

  authored
  0646602

  Copy full SHA for 0646602

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 05eb3f9
  pre-commit-ci[bot]

  committed
  05eb3f9

  Copy full SHA for 05eb3f9

• Fixing syntax error created by merge of dev to PR

  Show description for 788cd74
  atbenmurray

  committed
  788cd74

  Copy full SHA for 788cd74

• Fixing issues with pad_func post merge

  Show description for 4bd22f8
  atbenmurray

  committed
  4bd22f8

  Copy full SHA for 4bd22f8

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 1e0510c
  pre-commit-ci[bot]

  committed
  1e0510c

  Copy full SHA for 1e0510c

• Fixing issues in crop while running unit tests

  Show description for c36b69f
  atbenmurray

  committed
  c36b69f

  Copy full SHA for c36b69f

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  8a4f310

  Copy full SHA for 8a4f310

• Fixing issues with OneOf/SomeOf/RandomOrder after dev merge

  Show description for 3c69776
  atbenmurray

  committed
  3c69776

  Copy full SHA for 3c69776

• More croppad fixes post dev merge

  Show description for 6b94aa1
  atbenmurray

  committed
  6b94aa1

  Copy full SHA for 6b94aa1

• Fixing test_nvtx_decorator after def merge

  Show description for bf1c01a
  atbenmurray

  committed
  bf1c01a

  Copy full SHA for bf1c01a

Commits on Apr 23, 2023

• Removed use of **kwargs parameter in tests as it isn't supported by apply_pending. Fixing various tests by moving to use of 'overrides' on apply_pending

  Show description for 19745f9
  atbenmurray

  committed
  19745f9

  Copy full SHA for 19745f9

• Setting use of lazy_evaluation to False for Rand2D/Rand3DElastic

  Show description for b219f13
  atbenmurray

  committed
  b219f13

  Copy full SHA for b219f13

• Fixed test_spatial_pad

  Show description for 6af8f24
  atbenmurray

  committed
  6af8f24

  Copy full SHA for 6af8f24

• Renaming lazy_evaluation to lazy

  Show description for 173c161
  atbenmurray

  committed
  173c161

  Copy full SHA for 173c161

• Fixed all outstanding usages of apply_pending in tests. Removed the

  Show description for 2262ba9
  atbenmurray

  committed
  2262ba9

  Copy full SHA for 2262ba9

Commits on Apr 24, 2023

• Merge branch 'dev' into lazy_eval_refactor

  Show description for aaaea13
  atbenmurray

  authored
  aaaea13

  Copy full SHA for aaaea13

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 088d14e
  pre-commit-ci[bot]

  committed
  088d14e

  Copy full SHA for 088d14e

• Accepting formatting auto-fixes

  Show description for 3e6a637
  atbenmurray

  committed
  3e6a637

  Copy full SHA for 3e6a637

• Renaming surviving lazy_evaluation instances to lazy.

  Show description for 98a53bf
  atbenmurray

  committed
  98a53bf

  Copy full SHA for 98a53bf

• Renamed the last errant 'lazy_evaluation' instances to 'lazy'

  Show description for 28a0175
  atbenmurray

  committed
  28a0175

  Copy full SHA for 28a0175

• Fixing ruff errors for over-long line lengths

  Show description for 4e9b6c6
  atbenmurray

  committed
  4e9b6c6

  Copy full SHA for 4e9b6c6

• Fix for issue when the 'lazy' property is set to None

  Show description for ad23bea
  atbenmurray

  committed
  ad23bea

  Copy full SHA for ad23bea

• Fix for _apply_transform when lazy is None, post merge tidy up

  Show description for 81549e2
  atbenmurray

  committed
  81549e2

  Copy full SHA for 81549e2

• Removing the redundant check for log_stats from

  Show description for 77eff5b
  atbenmurray

  committed
  77eff5b

  Copy full SHA for 77eff5b

• Further formatting auto-fixes

  Show description for 7c53d26
  atbenmurray

  committed
  7c53d26

  Copy full SHA for 7c53d26

• Making default for overrides be None instead of {}.

  Show description for ee5378f
  atbenmurray

  committed
  ee5378f

  Copy full SHA for ee5378f

• Changed execute_pending_transforms to not make a shallow copy of dictionary 'data' objects

  Show description for 28c05d0
  atbenmurray

  committed
  28c05d0

  Copy full SHA for 28c05d0

• Fixing docstring for Compose

  Show description for d96fef0
  atbenmurray

  committed
  d96fef0

  Copy full SHA for d96fef0

• Fixing type complaints

  Show description for 654cf48
  atbenmurray

  committed
  654cf48

  Copy full SHA for 654cf48

Commits on Apr 25, 2023

• Fix for tests/tests_integration_lazy_samples. The modified lazy

  Show description for 64ec242
  atbenmurray

  committed
  64ec242

  Copy full SHA for 64ec242

• Flake8 fix

  Show description for f38eb9b
  atbenmurray

  committed
  f38eb9b

  Copy full SHA for f38eb9b

• Flake8 fixes

  Show description for 14349ff
  atbenmurray

  committed
  14349ff

  Copy full SHA for 14349ff

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 51fda45
  pre-commit-ci[bot]

  committed
  51fda45

  Copy full SHA for 51fda45

• Autoformat style fixes

  Show description for c5742c0
  atbenmurray

  committed
  c5742c0

  Copy full SHA for c5742c0

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  ef5173e

  Copy full SHA for ef5173e

• Fixing bug introduced by flake8 fix

  Show description for 916b0a9
  atbenmurray

  committed
  916b0a9

  Copy full SHA for 916b0a9

• Merge branch 'dev' into lazy_eval_refactor

  atbenmurray

  authored
  20c1cfc

  Copy full SHA for 20c1cfc

• Removal of obsolete lazy eval code

  Show description for c94341f
  atbenmurray

  committed
  c94341f

  Copy full SHA for c94341f

• Autoformat shuffle

  Show description for cc51f2f
  atbenmurray

  committed
  cc51f2f

  Copy full SHA for cc51f2f

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 06aad01
  pre-commit-ci[bot]

  committed
  06aad01

  Copy full SHA for 06aad01

• Resolving mypy issues

  Show description for 3ae46e9
  atbenmurray

  committed
  3ae46e9

  Copy full SHA for 3ae46e9

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  95a6a5f

  Copy full SHA for 95a6a5f

• Finally got to grips with mypy troubles

  Show description for 81559fa
  atbenmurray

  committed
  81559fa

  Copy full SHA for 81559fa

• Final mypy complaints

  Show description for af9cad1
  atbenmurray

  committed
  af9cad1

  Copy full SHA for af9cad1

• Chasing autofixes again

  Show description for a9c8849
  atbenmurray

  committed
  a9c8849

  Copy full SHA for a9c8849

• test_invert_warn_pending is now obsolete due to this no longer being an

  Show description for aadbae3
  atbenmurray

  committed
  aadbae3

  Copy full SHA for aadbae3

• Adding documentation for ApplyPending/ApplyPendingd. Adding more

  Show description for 1cccf9b
  atbenmurray

  committed
  1cccf9b

  Copy full SHA for 1cccf9b

• More autofix

  Show description for 9ae1140
  atbenmurray

  committed
  9ae1140

  Copy full SHA for 9ae1140

• Restoring lazy.setters for croppad and spatial lazy transforms

  Show description for bb2ad0f
  atbenmurray

  committed
  bb2ad0f

  Copy full SHA for bb2ad0f

• Undoing the previous commit until I get to the bottom of the randaffined

  Show description for 5abe294
  atbenmurray

  committed
  5abe294

  Copy full SHA for 5abe294

Commits on Apr 26, 2023

• Making apis for OneOf/SomeOf/RandomOrder consistent with Compose

  Show description for c2bf4a7
  atbenmurray

  committed
  c2bf4a7

  Copy full SHA for c2bf4a7

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for b16a87f
  pre-commit-ci[bot]

  committed
  b16a87f

  Copy full SHA for b16a87f

• Removing partial docstring for 'lazy', which isn't on the init parameter

  Show description for 816666e
  atbenmurray

  committed
  816666e

  Copy full SHA for 816666e

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  8318121

  Copy full SHA for 8318121

• Adding execute_pending_transforms to lazy/functional __all__

  Show description for 0e10c24
  atbenmurray

  committed
  0e10c24

  Copy full SHA for 0e10c24

• Removing LazyMode; lazy is now True / False / None

  Show description for f323ff9
  atbenmurray

  committed
  f323ff9

  Copy full SHA for f323ff9

• Renamed execute_pending_transforms to apply_pending_transforms.

  Show description for 4b69ec6
  atbenmurray

  committed
  4b69ec6

  Copy full SHA for 4b69ec6

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 29ce2b7
  pre-commit-ci[bot]

  committed
  29ce2b7

  Copy full SHA for 29ce2b7

• Removed "LazyMode" from enums.py __all__

  Show description for 6774aaa
  atbenmurray

  committed
  6774aaa

  Copy full SHA for 6774aaa

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  de5b9b8

  Copy full SHA for de5b9b8

• Modified ApplyPending/ApplyPendingd in the light of the override issue

  Show description for 1c7d172
  atbenmurray

  committed
  1c7d172

  Copy full SHA for 1c7d172

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for bb22c13
  pre-commit-ci[bot]

  committed
  bb22c13

  Copy full SHA for bb22c13

• Correction to type info for execute_compose lazy parameter.

  Show description for 2159ce8
  atbenmurray

  committed
  2159ce8

  Copy full SHA for 2159ce8

• Removal of comment in docstring about IdentityD being used to cause

  Show description for 2c3172d
  atbenmurray

  committed
  2c3172d

  Copy full SHA for 2c3172d

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  bb1214c

  Copy full SHA for bb1214c

• Logging refactored with pending pipeline logging enabled

  Show description for 5a7820c
  atbenmurray

  committed
  5a7820c

  Copy full SHA for 5a7820c

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 503db85
  pre-commit-ci[bot]

  committed
  503db85

  Copy full SHA for 503db85

• All logging_names are now None by default to prevent massive spam in

  Show description for 1af35fd
  atbenmurray

  committed
  1af35fd

  Copy full SHA for 1af35fd

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  75771a8

  Copy full SHA for 75771a8

• Merge branch 'dev' into lazy_eval_refactor

  atbenmurray

  authored
  d97095a

  Copy full SHA for d97095a

• More autofixes

  Show description for af6cd62
  atbenmurray

  committed
  af6cd62

  Copy full SHA for af6cd62

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  cd246a8

  Copy full SHA for cd246a8

• Making apply_transform logger_name None by default

  Show description for 1403d77
  atbenmurray

  committed
  1403d77

  Copy full SHA for 1403d77

• Added a dictionary test to the compose logging test suite

  Show description for 5c4c10a
  atbenmurray

  committed
  5c4c10a

  Copy full SHA for 5c4c10a

Commits on Apr 27, 2023

• Updated docstring for _apply_transform

  Show description for 5755a65
  atbenmurray

  committed
  5755a65

  Copy full SHA for 5755a65

• Removed spurious empty string at the end of one of the logging test case

  Show description for ca0905a
  atbenmurray

  committed
  ca0905a

  Copy full SHA for ca0905a

• All spatial transforms now initialize LazyTransform correctly

  Show description for e8fdf5a
  atbenmurray

  committed
  e8fdf5a

  Copy full SHA for e8fdf5a

• Adding setters for lazy back in.

  Show description for 70d3517
  atbenmurray

  committed
  70d3517

  Copy full SHA for 70d3517

• Merge branch 'dev' into lazy_eval_refactor

  Show description for b361a13
  atbenmurray

  authored
  b361a13

  Copy full SHA for b361a13

• Sorting out line length complaint in compose logging tests

  Show description for a6ad51e
  atbenmurray

  committed
  a6ad51e

  Copy full SHA for a6ad51e

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  7ec8429

  Copy full SHA for 7ec8429

• Fix for old lazy_evaluation name creeping in during merge

  Show description for 305b88e
  atbenmurray

  committed
  305b88e

  Copy full SHA for 305b88e

• Autofix

  Show description for 2aa0ada
  atbenmurray

  committed
  2aa0ada

  Copy full SHA for 2aa0ada

• Merge branch 'Project-MONAI:dev' into lazy_eval_refactor

  atbenmurray

  authored
  7b092ca

  Copy full SHA for 7b092ca

• Using get_logger so that named loggers all get set up correctly

  Show description for 62431ff
  atbenmurray

  committed
  62431ff

  Copy full SHA for 62431ff

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  6cdf4c6

  Copy full SHA for 6cdf4c6

Commits on Apr 28, 2023

• Fixes for logging; additional compose logging tests; missing imports

  Show description for 2ea89c1
  atbenmurray

  committed
  2ea89c1

  Copy full SHA for 2ea89c1

• Adding ApplyPending and ApplyPendingd to transforms.rst

  Show description for 628a7f8
  atbenmurray

  committed
  628a7f8

  Copy full SHA for 628a7f8

• Fixed transforms.rst modifications

  Show description for 5b34755
  atbenmurray

  committed
  5b34755

  Copy full SHA for 5b34755

Commits on May 2, 2023

• Refactor of lazy to provide in_order and out_of_order lazy execution

  Show description for d547b81
  atbenmurray

  committed
  d547b81

  Copy full SHA for d547b81

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  03386dc

  Copy full SHA for 03386dc

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for d2fa521
  pre-commit-ci[bot]

  committed
  d2fa521

  Copy full SHA for d2fa521

• Tidied up __all__ issues caused by refactor

  Show description for eb641c6
  atbenmurray

  committed
  eb641c6

  Copy full SHA for eb641c6

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  d7d7cdb

  Copy full SHA for d7d7cdb

• Removed can_invert flag from compose compiler policy

  Show description for 29b37bf
  atbenmurray

  committed
  29b37bf

  Copy full SHA for 29b37bf

Commits on May 3, 2023

• Moved to use of a TraceKey.STATUS flag. This can be used to track

  Show description for 3194980
  atbenmurray

  committed
  3194980

  Copy full SHA for 3194980

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 5ff516d
  pre-commit-ci[bot]

  committed
  5ff516d

  Copy full SHA for 5ff516d

• Formatting autofixes

  Show description for eebb3de
  atbenmurray

  committed
  eebb3de

  Copy full SHA for eebb3de

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  d966856

  Copy full SHA for d966856

• Lazy {reorder: lazy_last_nosync} now passes

  Show description for e39e0a3
  atbenmurray

  committed
  e39e0a3

  Copy full SHA for e39e0a3

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for cf58b9f
  pre-commit-ci[bot]

  committed
  cf58b9f

  Copy full SHA for cf58b9f

Commits on May 4, 2023

• Fixed broken call to isinstance in lazy executors

  Show description for 883f8c5
  atbenmurray

  committed
  883f8c5

  Copy full SHA for 883f8c5

• Autofix

  Show description for e81f359
  atbenmurray

  committed
  e81f359

  Copy full SHA for e81f359

• Resolving lint issue

  Show description for db1486b
  atbenmurray

  committed
  db1486b

  Copy full SHA for db1486b

• Missing passing logger_name through to _apply_transform when mapping over sequence:

  Show description for b151607
  atbenmurray

  committed
  b151607

  Copy full SHA for b151607

• Autofix

  Show description for 24286f1
  atbenmurray

  committed
  24286f1

  Copy full SHA for 24286f1

• Added missing lazy=None option from integration tests for lazy

  Show description for 43f7bc0
  atbenmurray

  committed
  43f7bc0

  Copy full SHA for 43f7bc0

• Autofix

  Show description for b217dbe
  atbenmurray

  committed
  b217dbe

  Copy full SHA for b217dbe

Commits on May 5, 2023

• Fixing lint issues

  Show description for ed1d952
  atbenmurray

  committed
  ed1d952

  Copy full SHA for ed1d952

• Autofixes

  Show description for e7f3a07
  atbenmurray

  committed
  e7f3a07

  Copy full SHA for e7f3a07

• lint fix

  Show description for 0751c52
  atbenmurray

  committed
  0751c52

  Copy full SHA for 0751c52

• started on the lazy resampling topic page

  Show description for 6114a67
  atbenmurray

  committed
  6114a67

  Copy full SHA for 6114a67

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  240059b

  Copy full SHA for 240059b

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 23ff89c
  pre-commit-ci[bot]

  committed
  23ff89c

  Copy full SHA for 23ff89c

Commits on May 6, 2023

• Removing unused Sequence import from lazy/executors

  Show description for 5e1b81d
  atbenmurray

  committed
  5e1b81d

  Copy full SHA for 5e1b81d

• Renaming ComposeCompiler to ExecuteOptions in test_compose

  Show description for 5dd6113
  atbenmurray

  committed
  5dd6113

  Copy full SHA for 5dd6113

Commits on May 10, 2023

• Update tests/test_compose.py

  Show description for 74bed34
  

  atbenmurray

  and

  ericspod

  authored
  74bed34

  Copy full SHA for 74bed34

• Execution options is no longer a poltergeist. Refactored is_tensor_invertible. Removed LAZY from default transform_info(). It is now added during 'track_transform_meta'

  Show description for 76e4b85
  atbenmurray

  committed
  76e4b85

  Copy full SHA for 76e4b85

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  1c4fa6c

  Copy full SHA for 1c4fa6c

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 8dde40d
  pre-commit-ci[bot]

  committed
  8dde40d

  Copy full SHA for 8dde40d

• Removing unnecessary active_key property

  Show description for 7fd32e2
  atbenmurray

  committed
  7fd32e2

  Copy full SHA for 7fd32e2

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  10d95ce

  Copy full SHA for 10d95ce

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 0d6a847
  pre-commit-ci[bot]

  committed
  0d6a847

  Copy full SHA for 0d6a847

Commits on May 11, 2023

• Fix for multi-sampled data for transforms that aceept *args; refactoring out of order execution for brevity

  Show description for 1ceeb1a
  atbenmurray

  committed
  1ceeb1a

  Copy full SHA for 1ceeb1a

• Merge branch 'lazy_eval_refactor' of github.com:atbenmurray/monai into lazy_eval_refactor

  atbenmurray

  committed
  38bdef6

  Copy full SHA for 38bdef6

Commits on May 21, 2023

• Renaming LazyTrait partially_lazy -> checks_data

  Show description for 6e0cfd9
  atbenmurray

  committed
  6e0cfd9

  Copy full SHA for 6e0cfd9

• Merge branch 'Project-MONAI:dev' into lazy_eval_refactor

  atbenmurray

  authored
  f2fb06a

  Copy full SHA for f2fb06a