Added data import functions

Plant-Food-Research-Open · Jan 11, 2024 · b6808bf · b6808bf
1 parent 5183813
commit b6808bf
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Showing 35 changed files with 2,792 additions and 2 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -6,3 +6,4 @@
 ^docs$
 ^pkgdown$
 ^\.github$
+^data-raw$
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -23,4 +23,22 @@ Imports:
     dplyr,
     ggplot2,
     methods,
-    MultiDataSet
+    MultiDataSet,
+    purrr,
+    readr,
+    rlang,
+    stringr,
+    tarchetypes,
+    targets,
+    tibble,
+    tidyr,
+    tidyselect
+Suggests: 
+    GenomicFeatures,
+    rtracklayer,
+    stringi,
+    testthat (>= 3.0.0),
+    textclean
+Config/testthat/edition: 3
+Depends: 
+    R (>= 2.10)
diff --git a/NAMESPACE b/NAMESPACE
@@ -1,9 +1,18 @@
 # Generated by roxygen2: do not edit by hand
 
+export(import_dataset_csv)
+export(import_dataset_csv_factory)
+export(import_fmetadata_csv)
+export(import_fmetadata_csv_factory)
+export(import_fmetadata_gff)
+export(import_fmetadata_gff_factory)
+export(import_smetadata_csv)
+export(import_smetadata_csv_factory)
 import(methods)
 importClassesFrom(Biobase,ExpressionSet)
 importClassesFrom(Biobase,SnpSet)
 importClassesFrom(Biobase,eSet)
 importClassesFrom(MultiDataSet,MultiDataSet)
 importFrom(dplyr,sym)
+importFrom(dplyr,where)
 importFrom(ggplot2,aes)