[DOCS] clean up (#101)

@smeisler's recommendations plus cleanup
PennLINC · Aug 27, 2024 · e11b199 · e11b199
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Showing 33 changed files with 7 additions and 11,761 deletions.
diff --git a/qsirecon/data/abcd/dataset_description.json b/qsirecon/data/abcd/dataset_description.json
diff --git a/qsirecon/data/abcd/sub-abcd/anat/sub-abcd_T1w.nii.gz b/qsirecon/data/abcd/sub-abcd/anat/sub-abcd_T1w.nii.gz
diff --git a/qsirecon/data/abcd/sub-abcd/anat/sub-abcd_T2w.json b/qsirecon/data/abcd/sub-abcd/anat/sub-abcd_T2w.json
diff --git a/qsirecon/data/abcd/sub-abcd/anat/sub-abcd_T2w.nii.gz b/qsirecon/data/abcd/sub-abcd/anat/sub-abcd_T2w.nii.gz
diff --git a/qsirecon/data/abcd/sub-abcd/dwi/sub-abcd_dwi.bval b/qsirecon/data/abcd/sub-abcd/dwi/sub-abcd_dwi.bval
diff --git a/qsirecon/data/abcd/sub-abcd/dwi/sub-abcd_dwi.bvec b/qsirecon/data/abcd/sub-abcd/dwi/sub-abcd_dwi.bvec
diff --git a/qsirecon/data/abcd/sub-abcd/dwi/sub-abcd_dwi.json b/qsirecon/data/abcd/sub-abcd/dwi/sub-abcd_dwi.json
diff --git a/qsirecon/data/abcd/sub-abcd/dwi/sub-abcd_dwi.nii.gz b/qsirecon/data/abcd/sub-abcd/dwi/sub-abcd_dwi.nii.gz
diff --git a/qsirecon/data/abcd/sub-abcd/fmap/sub-abcd_dir-AP_epi.json b/qsirecon/data/abcd/sub-abcd/fmap/sub-abcd_dir-AP_epi.json
diff --git a/qsirecon/data/abcd/sub-abcd/fmap/sub-abcd_dir-AP_epi.nii.gz b/qsirecon/data/abcd/sub-abcd/fmap/sub-abcd_dir-AP_epi.nii.gz
diff --git a/qsirecon/data/abcd/sub-abcd/fmap/sub-abcd_dir-PA_epi.json b/qsirecon/data/abcd/sub-abcd/fmap/sub-abcd_dir-PA_epi.json
diff --git a/qsirecon/data/abcd/sub-abcd/fmap/sub-abcd_dir-PA_epi.nii.gz b/qsirecon/data/abcd/sub-abcd/fmap/sub-abcd_dir-PA_epi.nii.gz
diff --git a/qsirecon/data/nonscalars/mrtrix_dwi.yaml b/qsirecon/data/nonscalars/mrtrix_dwi.yaml
@@ -17,7 +17,8 @@ exemplar_bundles:
         Description: |
             A zip archive containing the output directory from
             ``connectome2tck``. Unzip this directory and view
-            the exemplar connections using ``mrview`` to ensure
+            the exemplar connections (one is created for each nonzero edge
+            in the connectivity matrix) using ``mrview`` to ensure
             that you're seeing the expected shapes of connections.
 
 streamlines:

diff --git a/qsirecon/data/scalars/dsistudio_gqi.yaml b/qsirecon/data/scalars/dsistudio_gqi.yaml
@@ -3,7 +3,7 @@ ad_file:
         model: tensor
         param: ad
     metadata:
-        Description: AD
+        Description: Apparent Diffusivity from a tensor fit
 dti_fa_file:
     bids:
         model: tensor
@@ -21,25 +21,25 @@ ha_file:
         model: tensor
         param: ha
     metadata:
-        Description: HA
+        Description: Helix Angle from tensor fit
 iso_file:
     bids:
         model: gqi
         param: iso
     metadata:
-        Description: Isotropic Diffusion
+        Description: Isotropic Diffusion from GQI
 md_file:
     bids:
         model: tensor
         param: md
     metadata:
-        Description: Mean Diffusivity
+        Description: Mean Diffusivity from a tensor fit
 qa_file:
     bids:
         model: gqi
         param: qa
     metadata:
-        Description: Fractional Anisotropy from a tensor fit
+        Description: Quantitative Anisotropy from a GQI fit
 rd1_file:
     bids:
         model: rdi

diff --git a/...sts/crash_files/crash-20170905-182839-root-dvars-b78e9ea8-e295-48a1-af71-2d36afd9cebf.txt b/...sts/crash_files/crash-20170905-182839-root-dvars-b78e9ea8-e295-48a1-af71-2d36afd9cebf.txt
diff --git a/qsirecon/data/tests/work/reportlets/fmriprep/sub-01/anat/sub-01_T1w_conform.html b/qsirecon/data/tests/work/reportlets/fmriprep/sub-01/anat/sub-01_T1w_conform.html