Handle case when D*.fill_starts variables are not available in map files #252
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| name: LogVOL master branch only | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - github_action | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'tests/*' | |
| - 'datasets/*' | |
| pull_request: | |
| branches: master | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'tests/*' | |
| - 'datasets/*' | |
| env: | |
| HDF5_VERSION: 1.14.2 | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up dependencies | |
| run: | | |
| set -x | |
| sudo apt-get update | |
| sudo apt-get install automake autoconf libtool libtool-bin m4 | |
| # zlib | |
| sudo apt-get install zlib1g-dev | |
| # OpenMPI | |
| sudo apt-get install openmpi-bin openmpi-common libopenmpi-dev libgtk2.0-dev | |
| echo "---- location of OpenMPI C compiler ----" | |
| which mpicc | |
| ompi_info | |
| - name: Install HDF5 | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf HDF5 ; mkdir HDF5 ; cd HDF5 | |
| VER_MAJOR=${HDF5_VERSION%.*} | |
| VER_NOPATCH=${HDF5_VERSION%-*} # remove patch version | |
| curl -LO https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${VER_MAJOR}/hdf5-${VER_NOPATCH}/src/hdf5-${HDF5_VERSION}.tar.gz | |
| tar -zxf hdf5-${HDF5_VERSION}.tar.gz | |
| cd hdf5-${HDF5_VERSION} | |
| ./configure --prefix=${GITHUB_WORKSPACE}/HDF5 \ | |
| --silent \ | |
| --enable-hl \ | |
| --enable-parallel \ | |
| --enable-build-mode=production \ | |
| --disable-doxygen-doc \ | |
| --disable-doxygen-man \ | |
| --disable-doxygen-html \ | |
| --disable-tools \ | |
| --disable-tests \ | |
| --disable-fortran \ | |
| --disable-cxx \ | |
| CC=mpicc | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s distclean >> qout 2>&1 | |
| - name: Dump HDF5 config.log file | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cat ${GITHUB_WORKSPACE}/HDF5/hdf5-${HDF5_VERSION}/qout | |
| cat ${GITHUB_WORKSPACE}/HDF5/hdf5-${HDF5_VERSION}/config.log | |
| - name: Install Log VOL connector from its master branch | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf LOG_VOL ; mkdir LOG_VOL ; cd LOG_VOL | |
| rm -rf vol-log-based | |
| git clone -q https://github.com/DataLib-ECP/vol-log-based.git | |
| cd vol-log-based | |
| autoreconf -i | |
| ./configure --prefix=${GITHUB_WORKSPACE}/LOGVOL \ | |
| --silent \ | |
| --with-hdf5=${GITHUB_WORKSPACE}/HDF5 | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s distclean >> qout 2>&1 | |
| - name: Dump Log VOL config.log file | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cat ${GITHUB_WORKSPACE}/LOG_VOL/vol-log-based/qout | |
| cat ${GITHUB_WORKSPACE}/LOG_VOL/vol-log-based/config.log | |
| - name: Build and check E3SM_IO with HDF5 Log VOL connector only | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ./test_output | |
| autoreconf -i | |
| ./configure --with-hdf5=${GITHUB_WORKSPACE}/HDF5 \ | |
| --with-logvol=${GITHUB_WORKSPACE}/LOGVOL \ | |
| CC=mpicc CXX=mpicxx \ | |
| CFLAGS=-fno-var-tracking-assignments \ | |
| CXXFLAGS=-fno-var-tracking-assignments \ | |
| TESTMPIRUN="mpiexec --oversubscribe" | |
| make -j 8 | |
| make check | |
| - name: Dump log files if E3SM_IO with HDF5 Log VOL connector test failed | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat test.sh.log utils/*.log | |
| cat config.log | |
| - name: Test E3SM_IO -- parallel runs | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| make ptest | |
| - name: Test make distcheck | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| make distcheck DISTCHECK_CONFIGURE_FLAGS="--with-hdf5=${GITHUB_WORKSPACE}/HDF5 --with-logvol=${GITHUB_WORKSPACE}/LOGVOL CC=mpicc CXX=mpicxx CFLAGS=-fno-var-tracking-assignments CXXFLAGS=-fno-var-tracking-assignments" | |
| make distclean | |