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Merge pull request #343 from PRIDE-Archive/javizca-patch-1
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Update ProteomeXchange reference
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ypriverol authored Feb 1, 2024
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- **Citing the PRIDE database generally**: Perez-Riverol Y, Bai J, Bandla C, García-Seisdedos D, Hewapathirana S, Kamatchinathan S, Kundu DJ, Prakash A, Frericks-Zipper A, Eisenacher M, Walzer M, Wang S, Brazma A, Vizcaíno JA. [The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences](https://academic.oup.com/nar/article/50/D1/D543/6415112). Nucleic Acids Res. 2022 Jan 7;50(D1):D543-D552. doi: 10.1093/nar/gkab1038. PMID: 34723319; PMCID: PMC8728295.

- **Citing ProteomeXchange**: Deutsch EW, Csordas A, Sun Z, Jarnuczak A, Perez-Riverol Y, Ternent T, Campbell D, Bernal-Llinares M, Okuda S, Kawano S, Moritz RL,1 Carver JJ., Wang M, Ishihama Y, Bandeira N, Hermjakob H and Vizcaíno JA.
[The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210636/). Nucleic Acids Res. 2017 Jan 4; 45(Database issue): D1100–D1106. PubMed ID: 27924013.
- **Citing ProteomeXchange**: Deutsch EW, Bandeira N, Perez-Riverol Y, Sharma V, Carver J, Mendoza L, Kundu DJ, Wang S, Bandla C, Kamatchinathan S, Hewapathirana S, Pullman B, Wertz J, Sun Z, Kawano S, Okuda S, Watanabe Y, MacLean B, MacCoss M, Zhu Y, Ishihama Y and Vizcaíno JA .
[The ProteomeXchange Consortium at 10 years: 2023 update](https://academic.oup.com/nar/article/51/D1/D1539/6825347). Nucleic Acids Res. 2023 Jan 6; 51(D1): D1539–D1548. PubMed ID: 36370099.

- **When a dataset has been deposited in PRIDE (as part of ProteomeXchange) the corresponding manuscript should contain the following statement**:

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## Clinical (potentially sensitive) clinical human datasets

All datasets in PRIDE (as part of ProteomeXchange) are made fully open, once the corresponding paper is published. As such, accessed-controlled datasets are not supported at present. If you have concerns about submitting datasets to PRIDE due to legal issues, please contact [pride-support]([email protected]).
All datasets in PRIDE (as part of ProteomeXchange) are made fully open, once the corresponding paper is published. As such, accessed-controlled datasets are not supported at present. If you have concerns about submitting datasets to PRIDE due to legal issues, please contact [pride-support]([email protected]).

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