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Update zarr requirement from <3,>=2.13 to >=2.13,<4 #543

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@dependabot dependabot bot commented on behalf of github Mar 1, 2025

Updates the requirements on zarr to permit the latest version.

Release notes

Sourced from zarr's releases.

v3.0.4

What's Changed

Full Changelog: zarr-developers/zarr-python@v3.0.3...v3.0.4

Changelog

Sourced from zarr's changelog.

Release notes

.. towncrier release notes start

3.0.3 (2025-02-14)

Features


- Improves performance of FsspecStore.delete_dir for remote filesystems supporting concurrent/batched deletes, e.g., s3fs. (:issue:`2661`)
- Added :meth:`zarr.config.enable_gpu` to update Zarr's configuration to use GPUs. (:issue:`2751`)
- Avoid reading chunks during writes where possible. :issue:`757` (:issue:`2784`)
- :py:class:`LocalStore` learned to ``delete_dir``. This makes array and group deletes more efficient. (:issue:`2804`)
- Add `zarr.testing.strategies.array_metadata` to generate ArrayV2Metadata and ArrayV3Metadata instances. (:issue:`2813`)
- Add arbitrary `shards` to Hypothesis strategy for generating arrays. (:issue:`2822`)

Bugfixes

  • Fixed bug with Zarr using device memory, instead of host memory, for storing metadata when using GPUs. (:issue:2751)
  • The array returned by zarr.empty and an empty zarr.core.buffer.cpu.NDBuffer will now be filled with the specified fill value, or with zeros if no fill value is provided. This fixes a bug where Zarr format 2 data with no fill value was written with un-predictable chunk sizes. (:issue:2755)
  • Fix zip-store path checking for stores with directories listed as files. (:issue:2758)
  • Use removeprefix rather than replace when removing filename prefixes in FsspecStore.list (:issue:2778)
  • Enable automatic removal of needs release notes with labeler action (:issue:2781)
  • Use the proper label config (:issue:2785)
  • Alters the behavior of create_array to ensure that any groups implied by the array's name are created if they do not already exist. Also simplifies the type signature for any function that takes an ArrayConfig-like object. (:issue:2795)
  • Enitialise empty chunks to the default fill value during writing and add default fill values for datetime, timedelta, structured, and other (void* fixed size) data types (:issue:2799)
  • Ensure utf8 compliant strings are used to construct numpy arrays in property-based tests (:issue:2801)
  • Fix pickling for ZipStore (:issue:2807)
  • Update numcodecs to not overwrite codec configuration ever. Closes :issue:2800. (:issue:2811)
  • Fix fancy indexing (e.g. arr[5, [0, 1]]) with the sharding codec (:issue:2817)

Improved Documentation


- Added new user guide on :ref:`user-guide-gpu`. (:issue:`2751`)

3.0.2 (2025-01-31)

Features


&lt;/tr&gt;&lt;/table&gt; 
</code></pre>
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>

<ul>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/8d2fb47252a7ed5eb163ccfb0401e4e0486f72f6&quot;&gt;&lt;code&gt;8d2fb47&lt;/code&gt;&lt;/a> feat/batch creation (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2665&quot;&gt;#2665&lt;/a&gt;)&lt;/li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/8b59a38463dca7b3c908aa3db7d5321a80a3c285&quot;&gt;&lt;code&gt;8b59a38&lt;/code&gt;&lt;/a> Fix a bug when setting complete chunks (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2851&quot;&gt;#2851&lt;/a&gt;)&lt;/li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/96c967786c42e235f4d07dfcdd2a3a72bcd508e1&quot;&gt;&lt;code&gt;96c9677&lt;/code&gt;&lt;/a> don't serialize empty tuples for v2 filters, and warn when reading such metad...</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/e8bfb6484aeb543c21b9b0f6de2e0f0a034fc5d7&quot;&gt;&lt;code&gt;e8bfb64&lt;/code&gt;&lt;/a> Unnecessary lambda expression (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2828&quot;&gt;#2828&lt;/a&gt;)&lt;/li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/5a36e175325c1f6e55b0638009b8aa7e5ab89a05&quot;&gt;&lt;code&gt;5a36e17&lt;/code&gt;&lt;/a> Changelog for v3.0.3 (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2836&quot;&gt;#2836&lt;/a&gt;)&lt;/li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/8ad4cd69335a32d85b0b1c380572596b1e9f26b7&quot;&gt;&lt;code&gt;8ad4cd6&lt;/code&gt;&lt;/a> Run fsspec tests in min_deps env (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2835&quot;&gt;#2835&lt;/a&gt;)&lt;/li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/48f7c9af3b49e3221c65c3447e869437c0fb7575&quot;&gt;&lt;code&gt;48f7c9a&lt;/code&gt;&lt;/a> Feat: improves delete_dir for s3fs-backed FsspecStore (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2661&quot;&gt;#2661&lt;/a&gt;)&lt;/li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/23abb5b0cfb8b9565985e7e682a498405d630b34&quot;&gt;&lt;code&gt;23abb5b&lt;/code&gt;&lt;/a> Add more setitem property tests (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2825&quot;&gt;#2825&lt;/a&gt;)&lt;/li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/f8bc3153162e85ad41f62cdb6c693239868b85c6&quot;&gt;&lt;code&gt;f8bc315&lt;/code&gt;&lt;/a> create_array creates explicit groups (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2795&quot;&gt;#2795&lt;/a&gt;)&lt;/li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/3c25dacdd41e9a67f32c2cfac364292bb34d9370&quot;&gt;&lt;code&gt;3c25dac&lt;/code&gt;&lt;/a> Add shards to array strategy (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2822&quot;&gt;#2822&lt;/a&gt;)&lt;/li>
<li>Additional commits viewable in <a href="https://github.com/zarr-developers/zarr-python/compare/v2.13.0...v3.0.4&quot;&gt;compare view</a></li>
</ul>
</details>

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@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Mar 1, 2025
Updates the requirements on [zarr](https://github.com/zarr-developers/zarr-python) to permit the latest version.
- [Release notes](https://github.com/zarr-developers/zarr-python/releases)
- [Changelog](https://github.com/zarr-developers/zarr-python/blob/main/docs/release-notes.rst)
- [Commits](zarr-developers/zarr-python@v2.13.0...v3.0.4)

---
updated-dependencies:
- dependency-name: zarr
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/pip/zarr-gte-2.13-and-lt-4 branch from 0f552ce to 911164d Compare March 3, 2025 14:11
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@dependabot ignore this major version

@dependabot dependabot bot closed this Mar 3, 2025
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dependabot bot commented on behalf of github Mar 3, 2025

OK, I won't notify you about version 3.x.x again, unless you re-open this PR.

@dependabot dependabot bot deleted the dependabot/pip/zarr-gte-2.13-and-lt-4 branch March 3, 2025 14:13
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