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Bump the python group across 1 directory with 5 updates #502

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Updates the requirements on dask, xclim, bump-my-version, xesmf and setuptools to permit the latest version.
Updates dask to 2024.12.1

Release notes

Sourced from dask's releases.

2024.12.1

Changes

See the Changelog for more information.

Commits

Updates xclim to 0.54.0

Release notes

Sourced from xclim's releases.

v0.54.0

Contributors to this version: Trevor James Smith (@​Zeitsperre), Pascal Bourgault (@​aulemahal), Éric Dupuis (@​coxipi), Sascha Hofmann (@​saschahofmann).

New features and enhancements

  • Python 3.9 coding conventions have been dropped in favour of Python 3.10+ conventions. (PR/1988).
  • xclim.indices.chill_unit now accepts a new argument positive_only to compute the daily positive chill units. (PR/2003).

Breaking changes

  • The minimum required version of dask has been increased to 2024.8.1. (GH/1992, PR/1991).
  • The docstrings of many xclim modules, classes, methods, and functions have been slightly adjusted to ensure stricter compliance with established numpy docstring conventions. (PR/1988).
  • Using different time for ref and hist is now explicitly forbidden in many bias adjustment methods (e.g. EmpiricalQuantileMapping). Methods that combine ref, hist, and sim in the same map_groups also require that time arrays be equal in size. (GH/1903, PR/1995, PR/2013).
  • xclim now uses a src layout for the codebase. Structure-dependent functions, documentation, and build commands have been adapted to reflect these changes. Developers will need to reinstall xclim using pip install -e .. (PR/1971).
  • The call signature of xclim.indices.hot_spell_magnitude originally asked for an op argument that was not used. This argument has been removed. (PR/2018).

Bug fixes

  • Fixed pickling issue with xclim.sdba.Grouper and other classes for usage with dask>=2024.11. (GH/1992, PR/1993).
  • Fixed an issue with nimbus that was causing URL path components to be improperly joined. (PR/1997).
  • base_kws_vars in MBCn is now copied inside the adjust function so that in-place changes do not change the dict globally. (PR/1999).
  • Fixed a bug in the logic of xclim.testing.utils.load_registry that impacted the ability to load a registry.txt from a non-default repository. (PR/2001).

Internal changes

  • Changed French translations with word "pluvieux" to "avec précipitations". (GH/1960, PR/1994).
  • Nan values in OTC and dOTC are only dropped and replaced at the lowest level so that the size of time arrays never changes on xarray levels. (PR/1995, PR/2013)
  • streamflow entry replaced with "q" in variables.yml. (GH/1912, PR/1996).
  • In order to address Error 403 (forbidden) requests when retrieving data from GitHub via ReadTheDocs, the nimbus class has been modified to use an overloaded fetch method that appends a modified User-Agent header to the request. (PR/2001).
  • Addressed a very rare race condition that can happen if pytest is tearing down the test environment when running across multiple workers. (PR/1863).
  • The numpydoc linting tool has been added to the development dependencies, linting checks, and the pre-commit configuration. (PR/1988).
  • Added a more robust yamllint configuration to ensure that all YAML files are linted consistently. (PR/1971).
  • Addressed a very rare singular matrix error that can happen in test_loess_smoothing_nan. (PR/2015).
  • Addressed a handful of typing and call signature issues in the xclim codebase. (PR/2018).

CI changes

  • Added the green-coding-solutions/eco-ci-energy-estimation GitHub Action to the workflows to establish energy and carbon usage of CI activity. (PR/1863).
  • Various workflow security fixes: (PR/2023)
    • Simplified the bump-version.yml version string parsing to harden against template injection.
    • Further de-escalated privileges for most workflows.
Changelog

Sourced from xclim's changelog.

v0.54.0 (2024-12-16)

Contributors to this version: Trevor James Smith (:user:Zeitsperre), Pascal Bourgault (:user:aulemahal), Éric Dupuis (:user:coxipi), Sascha Hofmann (:user:saschahofmann).

New features and enhancements ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

  • Python 3.9 coding conventions have been dropped in favour of Python 3.10+ conventions. (:pull:1988).
  • xclim.indices.chill_unit now accepts a new argument positive_only to compute the daily positive chill units. (:pull:2003).

Breaking changes ^^^^^^^^^^^^^^^^

  • The minimum required version of dask has been increased to 2024.8.1. (:issue:1992, :pull:1991).
  • The docstrings of many xclim modules, classes, methods, and functions have been slightly adjusted to ensure stricter compliance with established numpy docstring conventions. (:pull:1988).
  • Using different time for ref and hist is now explicitly forbidden in many bias adjustment methods (e.g. EmpiricalQuantileMapping). Methods that combine ref, hist, and sim in the same map_groups also require that time arrays be equal in size. (:issue:1903, :pull:1995, :pull:2013).
  • xclim now uses a src layout for the codebase. Structure-dependent functions, documentation, and build commands have been adapted to reflect these changes. Developers will need to reinstall xclim using pip install -e .. (:pull:1971).
  • The call signature of xclim.indices.hot_spell_magnitude originally asked for an op argument that was not used. This argument has been removed. (:pull:2018).

Bug fixes ^^^^^^^^^

  • Fixed pickling issue with xclim.sdba.Grouper and other classes for usage with dask>=2024.11. (:issue:1992, :pull:1993).
  • Fixed an issue with nimbus that was causing URL path components to be improperly joined. (:pull:1997).
  • base_kws_vars in MBCn is now copied inside the adjust function so that in-place changes do not change the dict globally. (:pull:1999).
  • Fixed a bug in the logic of xclim.testing.utils.load_registry that impacted the ability to load a registry.txt from a non-default repository. (:pull:2001).

Internal changes ^^^^^^^^^^^^^^^^

  • Changed French translations with word "pluvieux" to "avec précipitations". (:issue:1960, :pull:1994).
  • Nan values in OTC and dOTC are only dropped and replaced at the lowest level so that the size of time arrays never changes on xarray levels. (:pull:1995, :pull:2013)
  • streamflow entry replaced with "q" in variables.yml. (:issue:1912, :pull:1996).
  • In order to address Error 403 (forbidden) requests when retrieving data from GitHub via ReadTheDocs, the nimbus class has been modified to use an overloaded fetch method that appends a modified User-Agent header to the request. (:pull:2001).
  • Addressed a very rare race condition that can happen if pytest is tearing down the test environment when running across multiple workers. (:pull:1863).
  • The numpydoc linting tool has been added to the development dependencies, linting checks, and the pre-commit configuration. (:pull:1988).
  • Added a more robust yamllint configuration to ensure that all YAML files are linted consistently. (:pull:1971).
  • Addressed a very rare singular matrix error that can happen in test_loess_smoothing_nan. (:pull:2015).
  • Addressed a handful of typing and call signature issues in the xclim codebase. (:pull:2018).

CI changes ^^^^^^^^^^

  • Added the green-coding-solutions/eco-ci-energy-estimation GitHub Action to the workflows to establish energy and carbon usage of CI activity. (:pull:1863).
  • Various workflow security fixes: (:pull:2023)
    • Simplified the bump-version.yml version string parsing to harden against template injection.
    • Further de-escalated privileges for most workflows.

v0.53.2 (2024-10-31)

Contributors to this version: Éric Dupuis (:user:coxipi), Pascal Bourgault (:user:aulemahal), Trevor James Smith (:user:Zeitsperre).

Breaking changes ^^^^^^^^^^^^^^^^

  • Due to a regression affecting symmetry of polyfit and polyval in xarray, xclim now requires xarray>=2023.11.0,!=2024.10.0 (see: pydata/xarray PR/9691 <https://github.com/pydata/xarray/pull/9691>_. (:pull:1978).

... (truncated)

Commits
  • 7af92dd Fix token (#2027)
  • e9a3e10 Bump version: 0.54.0-dev.0 → 0.54.0
  • 6589a5b fix token
  • 26f6f0d Prepare v0.54.0 (#2016)
  • 39d7335 Bump version: 0.53.3-dev.17 → 0.54.0-dev.0
  • a76da5d use signoff by default
  • 30bbb0e update release date
  • d561e64 Merge branch 'main' into prepare-v0540
  • b567de8 Bump mamba-org/setup-micromamba from 2.0.2 to 2.0.3 in the actions group (#2024)
  • 1059c43 Bump mamba-org/setup-micromamba from 2.0.2 to 2.0.3 in the actions group
  • Additional commits viewable in compare view

Updates bump-my-version from 0.28.1 to 0.29.0

Release notes

Sourced from bump-my-version's releases.

0.29.0

Compare the full difference.

New

  • Add support for specifying current version in do_show. 878197f

    This update introduces a --current-version option to the show command and passes it into the do_show function. If provided, the current_version is added to the configuration, allowing more control over version display or manipulation.

Updates

  • Update README to clarify pre_n handling with distance_to_latest_tag. c027879

    Revised the parse expression to exclude pre_n and updated serialize examples to use distance_to_latest_tag instead. Fixes #272

0.28.3

Compare the full difference.

Fixes

  • Fixed tag-name output. 0e773ec

  • Fixed PACKAGE env variable. 76c31c4

  • Fixed syntax errors in scripts. 56dfac0

  • Fixes missing runs-on in workflow. 5fe8ce5

  • Fix: resolve config path to align with the actual repository root. c872315

  • Fixed docs. 1d26b55

  • Fixed doc generation. aa95762

New

  • Added release workflow step. d56650a

  • Added write permissions for contents in github action. 85f19df

Other

... (truncated)

Changelog

Sourced from bump-my-version's changelog.

0.29.0 (2024-12-19)

Compare the full difference.

New

  • Add support for specifying current version in do_show. 878197f

    This update introduces a --current-version option to the show command and passes it into the do_show function. If provided, the current_version is added to the configuration, allowing more control over version display or manipulation.

Updates

  • Update README to clarify pre_n handling with distance_to_latest_tag. c027879

    Revised the parse expression to exclude pre_n and updated serialize examples to use distance_to_latest_tag instead. Fixes #272

0.28.3 (2024-12-17)

Compare the full difference.

Fixes

  • Fixed tag-name output. 0e773ec

  • Fixed PACKAGE env variable. 76c31c4

  • Fixed syntax errors in scripts. 56dfac0

  • Fixes missing runs-on in workflow. 5fe8ce5

  • Fix: resolve config path to align with the actual repository root. c872315

  • Fixed docs. 1d26b55

  • Fixed doc generation. aa95762

New

  • Added release workflow step. d56650a

  • Added write permissions for contents in github action. 85f19df

Other

... (truncated)

Commits
  • 621b2ed Version updated from 0.28.3 to 0.29.0
  • 878197f Add support for specifying current version in do_show
  • af83814 Merge pull request #274 from callowayproject/doc-fix
  • c027879 Update README to clarify pre_n handling with distance_to_latest_tag
  • f92b768 Version updated from 0.28.2 to 0.28.3
  • 2fa812c Merge pull request #270 from callowayproject/fix-release
  • c0e7ad4 Removed debug stuff
  • 0e773ec Fixed tag-name output
  • 76c31c4 Fixed PACKAGE env variable
  • 56dfac0 Fixed syntax errors in scripts
  • Additional commits viewable in compare view

Updates xesmf to 0.8.8

Release notes

Sourced from xesmf's releases.

v0.8.8

What's changed

  • Fix ESMpy memory issues by explictly freeing the Grid memory upon garbage collection of Regridder objects.
  • Address deprecation for xarray 2024.10 in the parallel weight generation.
  • Address an upcoming change in sparse 0.16 where COO fill values will distinguish between 0.0 and -0.0. This issue would affect spatial averaging over polygons with holes.
  • The conda package will now avoid installing ESMpy 8.4 to avoid importlib metadata bugs. See this issue, or this one.

Full Changelog: pangeo-data/xESMF@v0.8.7...v0.8.8

Changelog

Sourced from xesmf's changelog.

0.8.8 (2024-11-01)

  • Fix ESMpy memory issues by explictly freeing the Grid memory upon garbage collection of Regridder objects. By Pascal Bourgault <https://github.com/aulemahal>_.
  • Address deprecation for xarray 2024.10 in the parallel weight generation. By Pascal Bourgault <https://github.com/aulemahal>_.
  • Address an upcoming change in sparse 0.16 where COO fill values will distinguish between 0.0 and -0.0. This issue would affect spatial averaging over polygons with holes. By Pascal Bourgault <https://github.com/aulemahal>_.

0.8.7 (2024-07-16)

  • Cast grid sizes to python's int (another Numpy 2.0 fix). (:pull:377) By Pascal Bourgault <https://github.com/aulemahal>_.

0.8.6 (2024-06-26)

  • New xe.util.cell_area utility to compute the cell area using ESMF's internal mechanism. (:pull:372, :issue:369) By Jiawei Zhuang <https://github.com/JiaweiZhuang>_ and Pascal Bourgault <https://github.com/aulemahal>_.
  • Compatibility with Numpy 2.0 (NaN vs nan) (:pull:373) By Pascal Bourgault <https://github.com/aulemahal>_.

0.8.5 (2024-04-11)

  • Reverted to the chunking behaviour of xESMF 0.7 for cases where the spatial dimensions are not chunked on the source data. (:pull:348) By Pascal Bourgault <https://github.com/aulemahal>_.

0.8.4 (2024-02-26)

  • Fix regression from :pull:332 that made Regridder fail with rectilinear datasets and parallel=True. (:issue:343, :pull:344).
  • Allow Python 3.12 (and higher) again. (:pull:`345).

0.8.3 (2024-02-20)

  • Remove usage of private method of xarray that was removed in its 2024.02.0 version (:issue:338, :issue:340) By Pascal Bourgault <https://github.com/aulemahal>_.

Internal changes

* Test against ESMF 8.6

0.8.2 (2023-09-18)


Bug fixes


* Raise a meaningful error messages when the output grid has no chunks with `parallel=True` (:issue:`299`, :pull:`304`). By `Pascal Bourgault &lt;https://github.com/aulemahal&gt;`_.
* Correct guess of output chunks for ``SpatialAverager``.

0.8.1 (2023-09-05)


Bug fixes




    

  • Change import to support shapely 1 and 2.
    • 



0.8.0 (2023-09-01)


</tr></table>

... (truncated)

Commits

Updates setuptools from 75.3.0 to 75.6.0

Changelog

Sourced from setuptools's changelog.

v75.6.0

Features

  • Preserve original PKG-INFO into METADATA when creating wheel (instead of calling wheel.metadata.pkginfo_to_metadata). This helps to be more compliant with the flow specified in PEP 517. (#4701)
  • Changed the WindowsSdkVersion, FrameworkVersion32 and FrameworkVersion64 properties of setuptools.msvc.PlatformInfo to return an empty tuple instead of None as a fallthrough case -- by :user:Avasam (#4754)

v75.5.0

Features

  • Removed support for SETUPTOOLS_DANGEROUSLY_SKIP_PYPROJECT_VALIDATION, as it is deemed prone to errors. (#4746)

v75.4.0

Features

  • Added support for the environment variable SETUPTOOLS_DANGEROUSLY_SKIP_PYPROJECT_VALIDATION=true, allowing users to bypass the validation of pyproject.toml. This option should be used only as a last resort when resolving dependency issues, as it may lead to improper functioning. Users who enable this setting are responsible for ensuring that pyproject.toml complies with setuptools requirements. (#4611)

    .. attention:: This environment variable was removed in a later version of setuptools.

  • Require Python 3.9 or later. (#4718)

  • Remove dependency on importlib_resources and the vendored copy of the library. Instead, setuptools consistently rely on stdlib's importlib.resources (available on Python 3.9+). (#4718)

  • Setuptools' bdist_wheel implementation no longer produces wheels with the m SOABI flag (pymalloc-related). This flag was removed on Python 3.8+ (see :obj:sys.abiflags). (#4718)

  • Updated vendored packaging version to 24.2. (#4740)

... (truncated)

Commits
  • bf2ced2 Bump version: 75.5.0 → 75.6.0
  • 8685c80 Empty tuple instead of None for PlatformInfo version properties fallthrough (...
  • 50d671b Rename news fragment
  • 2b471c2 Changed the WindowsSdkVersion, FrameworkVersion32 and ``FrameworkVers...
  • 2c77cd2 Runtime typing fixes for typeshed return type merge (#4753
  • 9a4c8d4 Runtime typing fixes for typeshed return type merge
  • e622859 Preserve original PKG-INFO contents when creating wheel (instead of calling...
  • 0b5b417 Mark tests that may depend on external network
  • a4fa01d Add news fragment
  • 089aca9 Ignore coverage in test code
  • Additional commits viewable in compare view

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@dependabot
Bump the python group across 1 directory with 5 updates
0a36262 
Updates the requirements on [dask](https://github.com/dask/dask), [xclim](https://github.com/Ouranosinc/xclim), [bump-my-version](https://github.com/callowayproject/bump-my-version), [xesmf](https://github.com/pangeo-data/xESMF) and [setuptools](https://github.com/pypa/setuptools) to permit the latest version.

Updates `dask` to 2024.12.1
- [Release notes](https://github.com/dask/dask/releases)
- [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md)
- [Commits](dask/dask@2024.8.1...2024.12.1)

Updates `xclim` to 0.54.0
- [Release notes](https://github.com/Ouranosinc/xclim/releases)
- [Changelog](https://github.com/Ouranosinc/xclim/blob/main/CHANGELOG.rst)
- [Commits](Ouranosinc/xclim@v0.53.2...v0.54.0)

Updates `bump-my-version` from 0.28.1 to 0.29.0
- [Release notes](https://github.com/callowayproject/bump-my-version/releases)
- [Changelog](https://github.com/callowayproject/bump-my-version/blob/master/CHANGELOG.md)
- [Commits](callowayproject/bump-my-version@0.28.1...0.29.0)

Updates `xesmf` to 0.8.8
- [Release notes](https://github.com/pangeo-data/xESMF/releases)
- [Changelog](https://github.com/pangeo-data/xESMF/blob/master/CHANGES.rst)
- [Commits](pangeo-data/xESMF@v0.7.0...v0.8.8)

Updates `setuptools` from 75.3.0 to 75.6.0
- [Release notes](https://github.com/pypa/setuptools/releases)
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst)
- [Commits](pypa/setuptools@v75.3.0...v75.6.0)

---
updated-dependencies:
- dependency-name: dask
  dependency-type: direct:production
  dependency-group: python
- dependency-name: xclim
  dependency-type: direct:production
  dependency-group: python
- dependency-name: bump-my-version
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: xesmf
  dependency-type: direct:production
  dependency-group: python
- dependency-name: setuptools
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jan 1, 2025
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@dependabot merge

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dependabot bot commented on behalf of github Jan 15, 2025

Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot bot closed this Jan 15, 2025
@dependabot dependabot bot deleted the dependabot/pip/python-aa1b6c032e branch January 15, 2025 21:04
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