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pgleeson committed Nov 17, 2023
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21 changes: 10 additions & 11 deletions NeuroML2/LEMS_HHSmall.xml
Original file line number Diff line number Diff line change
@@ -1,35 +1,34 @@
<Lems>

<!--
This LEMS file has been automatically generated using PyNeuroML v1.1.1 (libNeuroML v0.5.5)
This LEMS file has been automatically generated using PyNeuroML v1.1.7 (libNeuroML v0.5.6)
-->

<!-- Specify which component to run -->
<Target component="Sim_HHSmall"/>

<!-- Include core NeuroML2 ComponentType definitions -->
<Include file="Cells.xml"/>
<Include file="Networks.xml"/>
<Include file="Simulation.xml"/>

<Include file="HHSmall.net.nml"/>

<Simulation id="Sim_HHSmall" length="300.0ms" step="0.0025ms" target="HHSmall" seed="12345"> <!-- Note seed: ensures same random numbers used every run -->

<Display id="DispPop__PYR" title="Membrane potentials of cells in PYR" timeScale="1ms" xmin="-30.0" xmax="330.0" ymin="-90" ymax="50">
<Line id="PYR[0]: v" quantity="PYR/0/CELL_HH_PYR/v" scale="1mV" color="#d54f33" timeScale="1ms"/>
<Line id="PYR[1]: v" quantity="PYR/1/CELL_HH_PYR/v" scale="1mV" color="#0534e4" timeScale="1ms"/>
<Line id="PYR[2]: v" quantity="PYR/2/CELL_HH_PYR/v" scale="1mV" color="#98e752" timeScale="1ms"/>
</Display>

<OutputFile id="Volts_file__PYR" fileName="Sim_HHSmall.PYR.v.dat">
<OutputColumn id="v_PYR_0_CELL_HH_PYR_v" quantity="PYR/0/CELL_HH_PYR/v"/>
<OutputColumn id="v_PYR_1_CELL_HH_PYR_v" quantity="PYR/1/CELL_HH_PYR/v"/>
<OutputColumn id="v_PYR_2_CELL_HH_PYR_v" quantity="PYR/2/CELL_HH_PYR/v"/>
<OutputColumn id="v_PYR_0_CELL_HH_PYR_v" quantity="PYR/0/CELL_HH_PYR/v"/>
<OutputColumn id="v_PYR_1_CELL_HH_PYR_v" quantity="PYR/1/CELL_HH_PYR/v"/>
<OutputColumn id="v_PYR_2_CELL_HH_PYR_v" quantity="PYR/2/CELL_HH_PYR/v"/>
</OutputFile>

</Simulation>

</Lems>
31 changes: 15 additions & 16 deletions NeuroML2/LEMS_HybridSmall.xml
Original file line number Diff line number Diff line change
@@ -1,47 +1,46 @@
<Lems>

<!--
This LEMS file has been automatically generated using PyNeuroML v1.1.1 (libNeuroML v0.5.5)
This LEMS file has been automatically generated using PyNeuroML v1.1.7 (libNeuroML v0.5.6)
-->

<!-- Specify which component to run -->
<Target component="Sim_HybridSmall"/>

<!-- Include core NeuroML2 ComponentType definitions -->
<Include file="Cells.xml"/>
<Include file="Networks.xml"/>
<Include file="Simulation.xml"/>

<Include file="HybridSmall.net.nml"/>

<Simulation id="Sim_HybridSmall" length="1000.0ms" step="0.005ms" target="HybridSmall" seed="12345"> <!-- Note seed: ensures same random numbers used every run -->

<Display id="DispPop__PYR_HH" title="Membrane potentials of cells in PYR_HH" timeScale="1ms" xmin="-100.0" xmax="1100.0" ymin="-90" ymax="50">
<Line id="PYR_HH[0]: v" quantity="PYR_HH/0/CELL_HH_PYR/v" scale="1mV" color="#d54f33" timeScale="1ms"/>
<Line id="PYR_HH[1]: v" quantity="PYR_HH/1/CELL_HH_PYR/v" scale="1mV" color="#0534e4" timeScale="1ms"/>
<Line id="PYR_HH[2]: v" quantity="PYR_HH/2/CELL_HH_PYR/v" scale="1mV" color="#98e752" timeScale="1ms"/>
</Display>

<Display id="DispPop__PYR_Izhi" title="Membrane potentials of cells in PYR_Izhi" timeScale="1ms" xmin="-100.0" xmax="1100.0" ymin="-90" ymax="50">
<Line id="PYR_Izhi[0]: v" quantity="PYR_Izhi/0/CELL_Izhi_PYR/v" scale="1mV" color="#bca074" timeScale="1ms"/>
<Line id="PYR_Izhi[1]: v" quantity="PYR_Izhi/1/CELL_Izhi_PYR/v" scale="1mV" color="#632794" timeScale="1ms"/>
<Line id="PYR_Izhi[2]: v" quantity="PYR_Izhi/2/CELL_Izhi_PYR/v" scale="1mV" color="#8a5d88" timeScale="1ms"/>
</Display>

<OutputFile id="Volts_file__PYR_HH" fileName="Sim_HybridSmall.PYR_HH.v.dat">
<OutputColumn id="v_PYR_HH_0_CELL_HH_PYR_v" quantity="PYR_HH/0/CELL_HH_PYR/v"/>
<OutputColumn id="v_PYR_HH_1_CELL_HH_PYR_v" quantity="PYR_HH/1/CELL_HH_PYR/v"/>
<OutputColumn id="v_PYR_HH_2_CELL_HH_PYR_v" quantity="PYR_HH/2/CELL_HH_PYR/v"/>
<OutputColumn id="v_PYR_HH_0_CELL_HH_PYR_v" quantity="PYR_HH/0/CELL_HH_PYR/v"/>
<OutputColumn id="v_PYR_HH_1_CELL_HH_PYR_v" quantity="PYR_HH/1/CELL_HH_PYR/v"/>
<OutputColumn id="v_PYR_HH_2_CELL_HH_PYR_v" quantity="PYR_HH/2/CELL_HH_PYR/v"/>
</OutputFile>

<OutputFile id="Volts_file__PYR_Izhi" fileName="Sim_HybridSmall.PYR_Izhi.v.dat">
<OutputColumn id="v_PYR_Izhi_0_CELL_Izhi_PYR_v" quantity="PYR_Izhi/0/CELL_Izhi_PYR/v"/>
<OutputColumn id="v_PYR_Izhi_1_CELL_Izhi_PYR_v" quantity="PYR_Izhi/1/CELL_Izhi_PYR/v"/>
<OutputColumn id="v_PYR_Izhi_2_CELL_Izhi_PYR_v" quantity="PYR_Izhi/2/CELL_Izhi_PYR/v"/>
<OutputColumn id="v_PYR_Izhi_0_CELL_Izhi_PYR_v" quantity="PYR_Izhi/0/CELL_Izhi_PYR/v"/>
<OutputColumn id="v_PYR_Izhi_1_CELL_Izhi_PYR_v" quantity="PYR_Izhi/1/CELL_Izhi_PYR/v"/>
<OutputColumn id="v_PYR_Izhi_2_CELL_Izhi_PYR_v" quantity="PYR_Izhi/2/CELL_Izhi_PYR/v"/>
</OutputFile>

</Simulation>

</Lems>
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