SnpData updates and reorder! (#45)

* snp_info reader

* typo

* concatenation

* modified notebook

* minor modification on notebook

* OpenCL kernels from klkeys/PLINK.jl

* added a notebook for GPU

* fixed syntax for using Requires

* print platform and device info on gpu_example.jl

* add verbose to filter and modify filter in snpdata

* add reorder

* update default for filter

* modify cat functions for updated structure of snpdata

* Update reorder.jl

* fix filter for SnpData

* doc and test for reorder

* quickfixes

* change test

* simplify merge test

* remove temp data files

.gitignore

@@ -6,3 +6,5 @@ docs/build/
 docs/site/
 .DS_Store
 .ipynb_checkpoints/
+
+Manifest.toml

.travis.yml

@@ -6,6 +6,8 @@ os:
 julia:
   - 1.0
   - 1.1
+  - 1.2
+  - 1.3
   - nightly
 matrix:
   allow_failures:

Project.toml

@@ -5,18 +5,19 @@ authors = ["Hua Zhou <[email protected]>", "Douglas Bates <[email protected]>",
 version = "0.3.2"
 
 [deps]
+CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 CodecBzip2 = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
+CodecXz = "ba30903b-d9e8-5048-a5ec-d1f5b0d4b47b"
 CodecZlib = "944b1d66-785c-5afd-91f1-9de20f533193"
-CodecXz = "ba30903b-d9e8-5048-a5ec-d1f5b0d4b47b" 
 CodecZstd = "6b39b394-51ab-5f42-8807-6242bab2b4c2"
-CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
+Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 Glob = "c27321d9-0574-5035-807b-f59d2c89b15c"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Missings = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
 Mmap = "a63ad114-7e13-5084-954f-fe012c677804"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"