Update README.md

README.md

@@ -1,2 +1,20 @@
 # DBGDE
 Using pre-made software trying to implement Mutual software algorithm to get differential expression. 
+
+
+We have:
+- One implementation trying to get GFA2 working at: https://github.com/Omig12/Mutual-pepino
+- The one I just did is GFA1 with GFApy working and beign read by Bandage. Used segment for both fragment and the segment, the Segment appears first follow by the kmer subsegments.
+```
+ Format of GFA1 Segment is: S id_of_original_segment contig.
+```
+```
+ Format of GFA1 subSegment is: S  id_of_original_segment:subsegmentid:(A:count,B:count) kmer
+```
+Where id_of_original_segment is the same as first segment, subsegmentid is this kmer id, a tuple with the count of all the times that kmer appears in the organism.
+
+An example to run the dbg.py is:
+
+```
+python dbg.py -k <kmer_size> -A <Organism A file(s)> -B <Organism B file(s)>
+```